Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RN7SL172P-201ENST00000460535 303 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC087588.1-201ENST00000462203 316 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RPS7P7-201ENST00000463499 571 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 FAM133DP-201ENST00000464802 691 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RPS20P22-201ENST00000473700 357 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RN7SL481P-201ENST00000477764 299 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RPL7AP6-201ENST00000477943 801 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RPL31P60-201ENST00000478450 367 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RN7SL244P-201ENST00000493405 297 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 PCBP2P3-201ENST00000509726 843 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 ATP5LP3-201ENST00000514223 304 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-709P-201ENST00000517257 104 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AP001804.3-201ENST00000525146 880 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AL049839.1-201ENST00000556151 657 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 BGLT3-201ENST00000564523 994 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 SNORA74C-1-201ENST00000580726 201 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC010201.1-201ENST00000605051 540 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AL592436.1-201ENST00000605135 558 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC090132.2-201ENST00000615881 347 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC002553.4-201ENST00000616896 331 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC008785.1-201ENST00000624475 456 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 MTND5P42-201ENST00000637720 498 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC004972.1-201ENST00000623934 2209 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AL133383.2-201ENST00000622958 2336 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC004520.1-201ENST00000608362 1413 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 SNORD115-7-201ENST00000365306 82 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-14P-201ENST00000384630 106 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 Y_RNA.576-201ENST00000384781 102 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 SNRPEP10-201ENST00000420249 274 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AL109913.1-201ENST00000421173 514 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 CALM2P2-201ENST00000428512 440 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 GTF2IP20-201ENST00000431663 360 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC083863.1-201ENST00000438811 231 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 CALM1P1-201ENST00000442082 433 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 CBWD4P-201ENST00000445695 655 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 KNOP1P3-201ENST00000446933 426 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 PRDX3P3-201ENST00000447765 522 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC000111.2-201ENST00000448200 210 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC073415.1-201ENST00000449240 153 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 HMGB3P8-201ENST00000449709 577 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 RPL37P6-201ENST00000460682 294 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 RN7SL329P-201ENST00000467740 299 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 RPS4XP1-201ENST00000482189 787 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 ATP5F1P5-201ENST00000526403 760 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC022832.1-201ENST00000530718 645 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 RANP3-201ENST00000530970 276 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC004024.1-201ENST00000549244 247 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC051619.2-201ENST00000559063 397 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 HSPE1P5-201ENST00000561489 272 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 MIR4703-201ENST00000577728 79 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 NRBF2P5-201ENST00000603087 788 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC126915.2-201ENST00000610957 190 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC012409.4-201ENST00000612923 249 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC034102.8-201ENST00000615146 484 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC019206.1-201ENST00000621938 425 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC011155.2-201ENST00000623202 216 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms