Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AL691482.1-201ENST00000453255 87 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC107222.1-201ENST00000510899 637 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC092436.3-201ENST00000511788 257 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 RNA5SP43-201ENST00000516559 110 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC131281.1-201ENST00000522984 164 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 HSBP1P1-201ENST00000555205 166 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC084783.1-201ENST00000565846 910 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 MIR4691-201ENST00000583764 85 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC012119.1-201ENST00000603184 222 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC007619.2-201ENST00000605743 379 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 AC073869.10-201ENST00000642016 354 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.78□□□□□ -1.64
UBE3DQ7Z6J8 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC109780.1-201ENST00000451768 1344 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-249P-201ENST00000363016 102 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RNA5SP455-201ENST00000365190 119 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-1329P-201ENST00000365664 107 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-842P-201ENST00000384269 107 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.577-201ENST00000384794 101 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 MIR517A-201ENST00000385001 87 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 PGBD4P6-201ENST00000421501 610 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 PPP1R11P2-201ENST00000423543 382 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC090774.1-201ENST00000435925 246 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RPL12P46-201ENST00000436610 195 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC004866.2-201ENST00000438285 481 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AL354714.3-201ENST00000447284 493 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RPL9P32-201ENST00000464118 620 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC092324.1-201ENST00000468671 324 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 VN1R105P-201ENST00000486595 910 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC011005.2-201ENST00000487324 359 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 COX6B1P2-201ENST00000489624 230 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 SLC25A15P5-201ENST00000508033 253 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC004980.4-201ENST00000513375 203 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC092490.3-201ENST00000545370 572 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 OR4H12P-201ENST00000556269 907 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AC093799.2-201ENST00000610062 578 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 SDR42E1P2-201ENST00000614861 481 ntBASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.77□□□□□ -1.65
UBE3DQ7Z6J8 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 AC005183.1-201ENST00000603687 1979 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.106-201ENST00000363189 100 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-450P-201ENST00000364654 107 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 RNA5SP428-201ENST00000365129 132 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 SNORD14.1-201ENST00000365609 90 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 CRP-202ENST00000368110 667 ntTSL 3 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 SNORA70.10-201ENST00000384515 134 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 Y_RNA.526-201ENST00000384572 110 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 RNU6-14P-201ENST00000384630 106 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 SNORA66-201ENST00000384792 133 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 MIR135A2-201ENST00000384854 100 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 MIR548I3-201ENST00000408378 149 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 MIR548I1-201ENST00000408810 149 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 MRPL48P1-201ENST00000445390 636 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 RPL21P41-201ENST00000459863 264 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 FTH1P2-201ENST00000466086 412 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 RPL17P19-201ENST00000489069 552 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 COX6B1P5-201ENST00000509843 249 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 SNORD116-26-201ENST00000516006 96 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 RNA5SP228-201ENST00000516232 133 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 RN7SKP260-201ENST00000516907 149 ntBASIC4.76□□□□□ -1.65
UBE3DQ7Z6J8 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 219 ms