Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC011451.2-201ENST00000604303 598 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC096577.2-201ENST00000611455 153 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AL359198.2-201ENST00000611836 194 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 AC010338.1-201ENST00000621823 717 ntBASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC40Q4G0X9 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 FAM35BP-202ENST00000497389 3337 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 RNU4-68P-201ENST00000364314 141 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 SNORA70.4-201ENST00000365509 134 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 Y_RNA.465-201ENST00000384293 102 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 RNU6-1197P-201ENST00000391183 107 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AL590004.2-201ENST00000404787 371 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AL138885.1-201ENST00000405921 675 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AL513175.2-201ENST00000422071 443 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 MTND5P14-201ENST00000441481 1267 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AL671855.1-201ENST00000446875 1203 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 RPL21P134-201ENST00000453468 483 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC021146.8-201ENST00000507455 733 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC116353.3-201ENST00000511215 249 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 COX6CP8-201ENST00000522620 226 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 OR7K1P-201ENST00000546439 926 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 MIR3609-201ENST00000582661 80 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC004987.4-201ENST00000603383 338 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AL139022.2-201ENST00000606934 443 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC090115.4-201ENST00000609970 188 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC006213.4-201ENST00000616184 634 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 MIR6130-201ENST00000619419 109 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC027309.3-201ENST00000623419 351 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 ASNSP3-201ENST00000451989 1306 ntBASIC3.14□□□□□ -1.91
CCDC40Q4G0X9 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 RNA5SP139-201ENST00000364340 117 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 Y_RNA.333-201ENST00000365274 102 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AL953862.1-201ENST00000423016 168 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 BX119904.4-201ENST00000424402 301 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC006946.1-201ENST00000429106 328 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC092573.2-201ENST00000434546 243 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC010099.1-201ENST00000455434 375 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 RPS27AP9-201ENST00000477681 438 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 FAM172BP-201ENST00000487497 1089 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 DSTNP2-201ENST00000504533 515 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 RNU6-798P-201ENST00000516912 103 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC079089.3-201ENST00000603094 673 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AL158211.4-201ENST00000606988 584 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 RNU4-5P-201ENST00000607255 135 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 ATP5A1P2-202ENST00000616464 443 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 AC008443.7-201ENST00000622195 246 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 MTCO1P9-201ENST00000505577 1534 ntBASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC40Q4G0X9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 RNU5A-1-201ENST00000362698 116 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 MIR1290-201ENST00000408735 78 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL645937.1-202ENST00000421799 937 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 HMGN2P30-201ENST00000423237 256 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 OR4K11P-201ENST00000431829 904 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 HSFY7P-201ENST00000432672 318 ntBASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.12□□□□□ -1.91
CCDC40Q4G0X9 HSFY8P-201ENST00000437934 318 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms