Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC1.58□□□□□ -2.16
FOXA3P55318 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.58□□□□□ -2.16
FOXA3P55318 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC1.58□□□□□ -2.16
FOXA3P55318 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA3P55318 MIR3921-201ENST00000577308 85 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 VN1R92P-201ENST00000598511 928 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 AL355877.2-201ENST00000603670 358 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 AL450472.3-201ENST00000615578 367 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 MIR6132-201ENST00000622083 109 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC1.58□□□□□ -2.16
FOXA3P55318 MIR7515-201ENST00000637837 67 ntBASIC1.58□□□□□ -2.16
FOXA3P55318 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA3P55318 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
FOXA3P55318 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
FOXA3P55318 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
FOXA3P55318 RNU4-23P-201ENST00000362839 140 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 RNA5SP68-201ENST00000363885 119 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA3P55318 RNU6-1035P-201ENST00000384477 107 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 MIR196B-201ENST00000384852 84 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 MIR128-1-201ENST00000384921 82 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 NDUFB4P4-201ENST00000404822 243 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 CIR1P3-201ENST00000405137 479 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 Z86062.1-201ENST00000406773 777 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 RPS3AP24-201ENST00000407896 734 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 GTF2IP20-201ENST00000431663 360 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 AC107083.1-201ENST00000439643 279 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC108938.1-201ENST00000451204 136 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 MTATP6P7-201ENST00000453315 681 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC104164.3-201ENST00000467363 1258 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 RPS27P23-201ENST00000487608 251 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 RN7SL274P-201ENST00000492268 272 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 AC023141.11-201ENST00000508864 202 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC026801.2-201ENST00000515352 425 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 RNU7-193P-201ENST00000516723 65 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 RNU6-798P-201ENST00000516912 103 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 RPL7P20-201ENST00000520308 745 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC1.57□□□□□ -2.16
FOXA3P55318 AP005902.1-201ENST00000521358 186 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 AC083923.1-201ENST00000523708 376 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
FOXA3P55318 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA3P55318 HSPE1P3-201ENST00000559254 309 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 GTF2IP8-201ENST00000560687 584 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC1.57□□□□□ -2.16
FOXA3P55318 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 AL022099.1-201ENST00000604551 712 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 OR2AS2P-201ENST00000606902 342 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 AC016542.1-201ENST00000608259 493 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
FOXA3P55318 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC024595.1-201ENST00000623088 387 ntBASIC1.57□□□□□ -2.16
FOXA3P55318 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.57□□□□□ -2.16
FOXA3P55318 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC1.57□□□□□ -2.16
FOXA3P55318 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
FOXA3P55318 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA3P55318 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA3P55318 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.56□□□□□ -2.16
FOXA3P55318 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
FOXA3P55318 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA3P55318 RNU6-543P-201ENST00000362576 108 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AC107081.1-201ENST00000414975 361 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AC009963.1-201ENST00000417265 157 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC1.56□□□□□ -2.16
FOXA3P55318 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA3P55318 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA3P55318 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC1.56□□□□□ -2.16
FOXA3P55318 CBWD4P-201ENST00000445695 655 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA3P55318 AL049714.1-201ENST00000466686 347 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
FOXA3P55318 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC1.56□□□□□ -2.16
FOXA3P55318 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC1.56□□□□□ -2.16
FOXA3P55318 AL359273.1-201ENST00000510918 627 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 SCARNA16.3-201ENST00000516595 184 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 RNU6-928P-201ENST00000516876 104 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 SNORA70.24-201ENST00000517233 118 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 HIGD1AP6-201ENST00000521833 279 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 OR4P1P-201ENST00000530808 1136 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA3P55318 AC068135.2-201ENST00000569293 1028 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AC074051.3-201ENST00000570238 358 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC1.56□□□□□ -2.16
FOXA3P55318 AL096840.1-201ENST00000603287 93 ntBASIC1.56□□□□□ -2.16
FOXA3P55318 AC097504.2-201ENST00000608088 454 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms