Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HMGB1P37-201ENST00000439613 609 ntBASIC3.04□□□□□ -1.92
CDX1P47902 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CDX1P47902 COX6CP12-201ENST00000446748 202 ntBASIC3.04□□□□□ -1.92
CDX1P47902 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.04□□□□□ -1.92
CDX1P47902 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.04□□□□□ -1.92
CDX1P47902 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.04□□□□□ -1.92
CDX1P47902 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CDX1P47902 RN7SL323P-201ENST00000494712 295 ntBASIC3.04□□□□□ -1.92
CDX1P47902 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CDX1P47902 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CDX1P47902 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.04□□□□□ -1.92
CDX1P47902 TTC39CP1-201ENST00000512513 755 ntBASIC3.04□□□□□ -1.92
CDX1P47902 AC010265.1-201ENST00000513509 211 ntBASIC3.04□□□□□ -1.92
CDX1P47902 SNORA31.1-201ENST00000515993 133 ntBASIC3.04□□□□□ -1.92
CDX1P47902 SNORA31.5-201ENST00000516190 133 ntBASIC3.04□□□□□ -1.92
CDX1P47902 RNU6-201P-201ENST00000517100 61 ntBASIC3.04□□□□□ -1.92
CDX1P47902 OR5G4P-201ENST00000525251 760 ntBASIC3.04□□□□□ -1.92
CDX1P47902 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.04□□□□□ -1.92
CDX1P47902 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.04□□□□□ -1.92
CDX1P47902 AC093012.1-202ENST00000549403 582 ntBASIC3.04□□□□□ -1.92
CDX1P47902 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
CDX1P47902 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.04□□□□□ -1.92
CDX1P47902 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.04□□□□□ -1.92
CDX1P47902 AC083760.1-201ENST00000589621 670 ntBASIC3.04□□□□□ -1.92
CDX1P47902 AC079089.3-201ENST00000603094 673 ntBASIC3.04□□□□□ -1.92
CDX1P47902 AL031775.1-201ENST00000607014 887 ntBASIC3.04□□□□□ -1.92
CDX1P47902 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.04□□□□□ -1.92
CDX1P47902 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.04□□□□□ -1.92
CDX1P47902 AL136313.1-201ENST00000624804 202 ntBASIC3.04□□□□□ -1.92
CDX1P47902 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.04□□□□□ -1.92
CDX1P47902 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.04□□□□□ -1.92
CDX1P47902 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CDX1P47902 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
CDX1P47902 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CDX1P47902 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
CDX1P47902 ZNF833P-201ENST00000424938 1494 ntBASIC3.03□□□□□ -1.92
CDX1P47902 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.03□□□□□ -1.92
CDX1P47902 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.03□□□□□ -1.92
CDX1P47902 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.03□□□□□ -1.92
CDX1P47902 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 RNU5E-5P-201ENST00000365379 116 ntBASIC3.03□□□□□ -1.92
CDX1P47902 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
CDX1P47902 MIR325-201ENST00000385260 98 ntBASIC3.03□□□□□ -1.92
CDX1P47902 MT-TH-201ENST00000387441 69 ntBASIC3.03□□□□□ -1.92
CDX1P47902 RNU1-101P-201ENST00000391171 127 ntBASIC3.03□□□□□ -1.92
CDX1P47902 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 RNU6ATAC-201ENST00000408749 126 ntBASIC3.03□□□□□ -1.92
CDX1P47902 RN7SKP27-201ENST00000410684 333 ntBASIC3.03□□□□□ -1.92
CDX1P47902 CYCSP19-201ENST00000411715 316 ntBASIC3.03□□□□□ -1.92
CDX1P47902 RPL17P12-201ENST00000413391 526 ntBASIC3.03□□□□□ -1.92
CDX1P47902 SPA17P1-201ENST00000416656 452 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AL353777.1-201ENST00000425552 326 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.03□□□□□ -1.92
CDX1P47902 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.03□□□□□ -1.92
CDX1P47902 AC099563.1-201ENST00000456086 418 ntBASIC3.03□□□□□ -1.92
CDX1P47902 MTND3P7-201ENST00000474435 343 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.03□□□□□ -1.92
CDX1P47902 AC118465.1-201ENST00000513820 1271 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC114797.1-201ENST00000514003 728 ntBASIC3.03□□□□□ -1.92
CDX1P47902 RNU6-64P-201ENST00000517119 105 ntBASIC3.03□□□□□ -1.92
CDX1P47902 NRON-201ENST00000517270 370 ntBASIC3.03□□□□□ -1.92
CDX1P47902 MTND2P38-201ENST00000522536 667 ntBASIC3.03□□□□□ -1.92
CDX1P47902 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 AL121766.1-201ENST00000547436 487 ntBASIC3.03□□□□□ -1.92
CDX1P47902 ZNF519P3-201ENST00000557158 1032 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC034105.4-201ENST00000568304 277 ntBASIC3.03□□□□□ -1.92
CDX1P47902 MIR5697-201ENST00000578045 78 ntBASIC3.03□□□□□ -1.92
CDX1P47902 MIR3146-201ENST00000580367 79 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.03□□□□□ -1.92
CDX1P47902 AL031985.2-201ENST00000600955 480 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC015726.1-201ENST00000602353 681 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC025811.1-201ENST00000604312 472 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AL359999.1-201ENST00000604513 294 ntBASIC3.03□□□□□ -1.92
CDX1P47902 HSPE1P7-201ENST00000604681 321 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AC008277.2-201ENST00000605196 797 ntBASIC3.03□□□□□ -1.92
CDX1P47902 AL591424.2-201ENST00000617023 128 ntBASIC3.03□□□□□ -1.92
CDX1P47902 SNHG22-203ENST00000617833 660 ntBASIC3.03□□□□□ -1.92
CDX1P47902 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
CDX1P47902 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CDX1P47902 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
CDX1P47902 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
CDX1P47902 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CDX1P47902 AP002088.1-201ENST00000382740 395 ntBASIC3.02□□□□□ -1.93
CDX1P47902 SNORD116-8-201ENST00000384365 95 ntBASIC3.02□□□□□ -1.93
CDX1P47902 MIR30B-201ENST00000384850 88 ntBASIC3.02□□□□□ -1.93
CDX1P47902 SOD2P1-201ENST00000396543 562 ntBASIC3.02□□□□□ -1.93
CDX1P47902 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.02□□□□□ -1.93
CDX1P47902 AL354719.1-201ENST00000406535 843 ntBASIC3.02□□□□□ -1.93
CDX1P47902 FCF1P10-201ENST00000407590 479 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AL513331.1-201ENST00000411908 397 ntBASIC3.02□□□□□ -1.93
CDX1P47902 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC3.02□□□□□ -1.93
CDX1P47902 ELOCP17-201ENST00000414751 326 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 AC006366.1-201ENST00000422002 759 ntBASIC3.02□□□□□ -1.93
CDX1P47902 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms