Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXC9P31274 LSM1P1-201ENST00000438629 273 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 PAXBP1P1-201ENST00000449315 447 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 SNORD109B-201ENST00000458961 67 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 SNORD109A-201ENST00000459128 67 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 AC146507.1-201ENST00000468335 354 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC9P31274 TMEM248P1-201ENST00000510579 951 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC9P31274 RPL12P22-201ENST00000519073 490 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC9P31274 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC9P31274 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXC9P31274 ROCK1P1-201ENST00000573767 549 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC9P31274 BNIP3P23-201ENST00000599655 511 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 HMGN2P28-201ENST00000606102 262 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 AL592295.2-201ENST00000612578 206 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC9P31274 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC9P31274 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
HOXC9P31274 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXC9P31274 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXC9P31274 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
HOXC9P31274 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC9P31274 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC9P31274 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
HOXC9P31274 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC9P31274 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HOXC9P31274 FTLP6-201ENST00000355274 422 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 MIR423-201ENST00000362201 94 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 RNU4-82P-201ENST00000362443 140 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 RNU6-343P-201ENST00000364709 104 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 SNORD116-1-201ENST00000384335 95 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 RN7SKP285-201ENST00000410137 318 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXC9P31274 AL590233.1-201ENST00000430017 456 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 RPS20P5-201ENST00000434808 360 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 MTND1P30-201ENST00000441241 901 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC118469.1-201ENST00000442943 488 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 KATNBL1P6-201ENST00000453433 915 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 FGF7P3-201ENST00000454645 303 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC092754.2-201ENST00000463506 460 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC004801.2-202ENST00000463559 283 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 HMGB1P36-201ENST00000487709 576 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC023424.2-201ENST00000493479 777 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC9P31274 RNU6-27P-201ENST00000516146 107 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 SNORA64.4-201ENST00000516632 81 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC9P31274 OR4P1P-201ENST00000530808 1136 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AP003385.6-201ENST00000531603 374 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC013828.2-201ENST00000532487 235 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXC9P31274 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.82□□□□□ -1.8
HOXC9P31274 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC9P31274 AC136618.2-201ENST00000575091 400 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 PIGPP4-201ENST00000584447 307 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.82□□□□□ -1.8
HOXC9P31274 AL669831.4-202ENST00000590817 238 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AL590229.1-201ENST00000603497 542 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AL390208.1-201ENST00000605885 644 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC106028.5-201ENST00000610332 395 ntBASIC3.82□□□□□ -1.8
HOXC9P31274 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.82□□□□□ -1.8
HOXC9P31274 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
HOXC9P31274 RNU6-28P-201ENST00000362378 107 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 RNA5SP502-201ENST00000362694 119 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 RNU1-112P-201ENST00000364401 164 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 RNA5SP167-201ENST00000365461 116 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 MT-TH-201ENST00000387441 69 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 U3.29-201ENST00000391296 212 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 RNA5SP274-201ENST00000410484 108 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 RPS7P13-201ENST00000413955 498 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC9P31274 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC9P31274 MED14P1-201ENST00000430517 648 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 MTCYBP45-201ENST00000435243 565 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXC9P31274 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.81□□□□□ -1.8
HOXC9P31274 SETP11-201ENST00000473027 690 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC9P31274 AC024589.1-201ENST00000512207 263 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC9P31274 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.81□□□□□ -1.8
HOXC9P31274 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.81□□□□□ -1.8
HOXC9P31274 AC007424.1-203ENST00000554613 687 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 AC091965.5-201ENST00000624785 342 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 AL359693.1-201ENST00000614959 2407 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 AC004944.1-201ENST00000517807 3059 ntBASIC3.81□□□□□ -1.8
HOXC9P31274 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HOXC9P31274 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC9P31274 SRP72P2-201ENST00000344851 1979 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC3.8□□□□□ -1.8
HOXC9P31274 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC9P31274 RNU5F-7P-201ENST00000363696 115 ntBASIC3.8□□□□□ -1.8
HOXC9P31274 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
HOXC9P31274 SNORA26.8-201ENST00000391306 124 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms