Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 RNU6-1066P-201ENST00000363573 105 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RNU1-109P-201ENST00000383960 147 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 SNORD116-12-201ENST00000384468 92 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RNU6-1300P-201ENST00000391046 108 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RPS4XP3-201ENST00000398541 413 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RNU4-22P-201ENST00000411058 166 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AC106883.1-201ENST00000418805 562 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 MTND2P9-201ENST00000422293 931 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AC096632.1-201ENST00000427395 310 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXA9P31269 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA9P31269 AL590664.1-201ENST00000448065 339 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AC104073.1-201ENST00000451988 151 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 GTF2IP9-201ENST00000502460 301 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 SEM1P1-201ENST00000506694 209 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXA9P31269 AC098799.2-201ENST00000509466 868 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RNU1-41P-201ENST00000516161 162 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RNU6-415P-201ENST00000516252 97 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 SNORA31.8-201ENST00000516327 108 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RNU1-48P-201ENST00000516400 162 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 SNORA48.10-201ENST00000516965 160 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXA9P31269 AC109329.2-201ENST00000519658 482 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AP003122.3-201ENST00000526316 255 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AC092470.1-201ENST00000546187 132 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 MTCYBP23-201ENST00000558717 1102 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AC087481.2-201ENST00000565492 330 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 MIR3912-201ENST00000577566 105 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 VN1R83P-201ENST00000595685 445 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 XIAPP1-201ENST00000603162 600 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 RNU4-5P-201ENST00000607255 135 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AC087241.4-201ENST00000612441 480 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AL138880.2-201ENST00000616214 239 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 AC064859.1-201ENST00000624741 174 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.75□□□□□ -1.97
HOXA9P31269 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA9P31269 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA9P31269 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXA9P31269 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA9P31269 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.75□□□□□ -1.97
HOXA9P31269 AC011460.1-201ENST00000636268 1834 ntBASIC2.75□□□□□ -1.97
HOXA9P31269 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HOXA9P31269 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXA9P31269 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 AC106754.1-201ENST00000562632 1513 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 SNORD62.1-201ENST00000362541 86 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 RNU6-492P-201ENST00000363035 104 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 SUGT1P1-201ENST00000379514 476 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 Y_RNA.408-201ENST00000383987 102 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 SNORA1.3-201ENST00000384676 136 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 MIR27B-201ENST00000385129 97 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 BX682237.1-201ENST00000415016 335 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AL137014.1-201ENST00000420490 1226 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 HMGN2P30-201ENST00000423237 256 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 AC241584.1-201ENST00000438469 1241 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AL031313.1-201ENST00000448435 256 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA9P31269 VPS26AP1-201ENST00000483197 979 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 RPL9P33-201ENST00000484311 566 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AC134050.1-201ENST00000495088 933 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA9P31269 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXA9P31269 AP000857.1-201ENST00000532151 543 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AC243972.3-201ENST00000539655 198 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.74□□□□□ -1.97
HOXA9P31269 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA9P31269 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA9P31269 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 AC020895.1-201ENST00000595362 272 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 GAS5-AS1-201ENST00000602767 694 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA9P31269 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
HOXA9P31269 AC022960.3-201ENST00000619794 441 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 U4.3-201ENST00000621047 82 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AC073348.1-201ENST00000623002 331 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AL512506.2-201ENST00000624472 458 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 AC026634.1-201ENST00000634369 198 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 LINC02211-204ENST00000642024 1070 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.74□□□□□ -1.97
HOXA9P31269 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.74□□□□□ -1.97
HOXA9P31269 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
HOXA9P31269 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXA9P31269 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXA9P31269 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXA9P31269 RNU6-1249P-201ENST00000363237 111 ntBASIC2.73□□□□□ -1.97
HOXA9P31269 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXA9P31269 SNORA36C-201ENST00000384289 132 ntBASIC2.73□□□□□ -1.97
HOXA9P31269 MIR181A2-201ENST00000384863 110 ntBASIC2.73□□□□□ -1.97
HOXA9P31269 MIR1261-201ENST00000408659 82 ntBASIC2.73□□□□□ -1.97
HOXA9P31269 SNORD88.1-201ENST00000408684 91 ntBASIC2.73□□□□□ -1.97
HOXA9P31269 AL161449.1-201ENST00000414531 1199 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms