Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 RN7SL722P-201ENST00000617780 284 ntBASIC5.7□□□□□ -1.5
RFX1P22670 RN7SL565P-201ENST00000618246 284 ntBASIC5.7□□□□□ -1.5
RFX1P22670 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.7□□□□□ -1.5
RFX1P22670 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
RFX1P22670 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
RFX1P22670 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.7□□□□□ -1.5
RFX1P22670 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
RFX1P22670 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
RFX1P22670 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
RFX1P22670 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
RFX1P22670 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
RFX1P22670 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
RFX1P22670 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 Y_RNA.158-201ENST00000363651 101 ntBASIC5.69□□□□□ -1.5
RFX1P22670 RNU6-266P-201ENST00000364225 107 ntBASIC5.69□□□□□ -1.5
RFX1P22670 RNA5SP455-201ENST00000365190 119 ntBASIC5.69□□□□□ -1.5
RFX1P22670 Y_RNA.404-201ENST00000383978 102 ntBASIC5.69□□□□□ -1.5
RFX1P22670 RNU6-629P-201ENST00000384061 103 ntBASIC5.69□□□□□ -1.5
RFX1P22670 RNA5SP339-201ENST00000390987 122 ntBASIC5.69□□□□□ -1.5
RFX1P22670 DUTP5-201ENST00000406790 469 ntBASIC5.69□□□□□ -1.5
RFX1P22670 RNU6-985P-201ENST00000410182 104 ntBASIC5.69□□□□□ -1.5
RFX1P22670 Y_RNA.594-201ENST00000410373 140 ntBASIC5.69□□□□□ -1.5
RFX1P22670 RNU6-293P-201ENST00000411259 106 ntBASIC5.69□□□□□ -1.5
RFX1P22670 AL160004.2-201ENST00000432935 350 ntBASIC5.69□□□□□ -1.5
RFX1P22670 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.69□□□□□ -1.5
RFX1P22670 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC5.69□□□□□ -1.5
RFX1P22670 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC5.69□□□□□ -1.5
RFX1P22670 SNORD108-201ENST00000459332 71 ntBASIC5.69□□□□□ -1.5
RFX1P22670 RN7SL738P-201ENST00000470264 297 ntBASIC5.69□□□□□ -1.5
RFX1P22670 AC026979.1-201ENST00000492525 396 ntBASIC5.69□□□□□ -1.5
RFX1P22670 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.69□□□□□ -1.5
RFX1P22670 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC5.69□□□□□ -1.5
RFX1P22670 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.69□□□□□ -1.5
RFX1P22670 AP004371.1-201ENST00000525240 214 ntBASIC5.69□□□□□ -1.5
RFX1P22670 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.69□□□□□ -1.5
RFX1P22670 AC022968.1-201ENST00000567372 442 ntBASIC5.69□□□□□ -1.5
RFX1P22670 FAM60BP-201ENST00000578364 658 ntBASIC5.69□□□□□ -1.5
RFX1P22670 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.69□□□□□ -1.5
RFX1P22670 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.69□□□□□ -1.5
RFX1P22670 AC011626.1-201ENST00000604710 562 ntBASIC5.69□□□□□ -1.5
RFX1P22670 FAM25E-202ENST00000608562 189 ntBASIC5.69□□□□□ -1.5
RFX1P22670 AC011890.2-201ENST00000613393 294 ntBASIC5.69□□□□□ -1.5
RFX1P22670 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.69□□□□□ -1.5
RFX1P22670 MIR6810-201ENST00000622701 70 ntBASIC5.69□□□□□ -1.5
RFX1P22670 AC091953.3-201ENST00000623220 236 ntBASIC5.69□□□□□ -1.5
RFX1P22670 TTK-211ENST00000627129 240 ntTSL 5 BASIC5.69□□□□□ -1.5
RFX1P22670 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
RFX1P22670 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.69□□□□□ -1.5
RFX1P22670 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.69□□□□□ -1.5
RFX1P22670 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RFX1P22670 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.68□□□□□ -1.5
RFX1P22670 AC104623.2-202ENST00000623477 4002 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC5.68□□□□□ -1.5
RFX1P22670 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.68□□□□□ -1.5
RFX1P22670 RNU5A-1-201ENST00000362698 116 ntBASIC5.68□□□□□ -1.5
RFX1P22670 RNA5SP235-201ENST00000365411 114 ntBASIC5.68□□□□□ -1.5
RFX1P22670 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 RNU6-196P-201ENST00000384315 107 ntBASIC5.68□□□□□ -1.5
RFX1P22670 MRPL42P3-201ENST00000401492 326 ntBASIC5.68□□□□□ -1.5
RFX1P22670 U3.35-201ENST00000408405 208 ntBASIC5.68□□□□□ -1.5
RFX1P22670 U3.36-201ENST00000408418 213 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.68□□□□□ -1.5
RFX1P22670 Y_RNA.605-201ENST00000410577 105 ntBASIC5.68□□□□□ -1.5
RFX1P22670 FAR2P2-201ENST00000413041 594 ntBASIC5.68□□□□□ -1.5
RFX1P22670 Z99755.1-201ENST00000414048 380 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AL049745.1-201ENST00000433953 286 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC5.68□□□□□ -1.5
RFX1P22670 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.68□□□□□ -1.5
RFX1P22670 AL360271.2-201ENST00000447710 161 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC5.68□□□□□ -1.5
RFX1P22670 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC5.68□□□□□ -1.5
RFX1P22670 AC084198.1-201ENST00000477747 402 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC5.68□□□□□ -1.5
RFX1P22670 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC5.68□□□□□ -1.5
RFX1P22670 AL117187.1-201ENST00000555482 181 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.68□□□□□ -1.5
RFX1P22670 LRRC37A5P-203ENST00000580181 585 ntBASIC5.68□□□□□ -1.5
RFX1P22670 MIR548AC-201ENST00000585049 88 ntBASIC5.68□□□□□ -1.5
RFX1P22670 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC5.68□□□□□ -1.5
RFX1P22670 AC073539.2-201ENST00000597113 165 ntBASIC5.68□□□□□ -1.5
RFX1P22670 SNORD91B-202ENST00000608459 222 ntBASIC5.68□□□□□ -1.5
RFX1P22670 AC107294.1-201ENST00000609524 467 ntBASIC5.68□□□□□ -1.5
RFX1P22670 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
RFX1P22670 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
RFX1P22670 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms