Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC11O43248 AL356057.1-201ENST00000533798 831 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.79□□□□□ -1.8
HOXC11O43248 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC11O43248 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC11O43248 AL163153.1-201ENST00000554223 283 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC11O43248 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC11O43248 MIR3146-201ENST00000580367 79 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.79□□□□□ -1.8
HOXC11O43248 SRGNP1-201ENST00000603392 451 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC008277.2-201ENST00000605196 797 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC245517.5-201ENST00000611529 162 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC013476.2-201ENST00000614456 459 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC010133.1-201ENST00000615809 842 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 AC108479.2-201ENST00000617314 601 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 Z69908.1-201ENST00000622603 247 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.79□□□□□ -1.8
HOXC11O43248 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXC11O43248 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC11O43248 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.79□□□□□ -1.8
HOXC11O43248 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
HOXC11O43248 OR4G2P-202ENST00000641004 1759 ntBASIC3.79□□□□□ -1.8
HOXC11O43248 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC11O43248 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC11O43248 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC11O43248 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC11O43248 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC11O43248 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC11O43248 RPL7P26-201ENST00000333817 754 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC11O43248 MIR218-2-201ENST00000385006 110 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 MIR34B-201ENST00000385076 84 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 MIR514A1-201ENST00000385133 98 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 HLFP1-201ENST00000402375 499 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 SNORA11.1-201ENST00000408133 129 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 U3.42-201ENST00000408746 214 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 RPL30P2-201ENST00000414021 291 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 ELOCP17-201ENST00000414751 326 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 USP9YP13-201ENST00000417797 480 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC11O43248 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC11O43248 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC11O43248 USP12PX-201ENST00000432383 1057 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC11O43248 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC11O43248 DNAJC19P1-201ENST00000455312 319 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC11O43248 RPL31P3-201ENST00000458430 332 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 U3.44-201ENST00000458938 192 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 RPS20P20-201ENST00000460498 340 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 RN7SL293P-201ENST00000481765 281 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXC11O43248 AC091965.2-201ENST00000512324 613 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 RPL12P22-201ENST00000519073 490 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC060788.1-201ENST00000521318 469 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC11O43248 AP002748.2-201ENST00000528671 348 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC11O43248 OR5B10P-201ENST00000532869 642 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXC11O43248 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXC11O43248 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AL157394.1-201ENST00000562983 1224 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 MIR4474-201ENST00000579189 78 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC11O43248 BNIP3P8-201ENST00000597863 560 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC110760.3-201ENST00000598794 467 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 RNU6-87P-201ENST00000607561 108 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC11O43248 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXC11O43248 SDR42E1P2-201ENST00000614861 481 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC104010.1-201ENST00000616889 150 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC002076.2-201ENST00000617362 122 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 AC010733.2-201ENST00000589496 5702 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 ZNF807-201ENST00000328088 1707 ntBASIC3.78□□□□□ -1.8
HOXC11O43248 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXC11O43248 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
HOXC11O43248 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC11O43248 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC11O43248 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXC11O43248 BDP1P-201ENST00000582658 1990 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXC11O43248 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
HOXC11O43248 SNORD9-201ENST00000362566 104 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 RNU4-91P-201ENST00000364778 135 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 RNA5SP107-201ENST00000411358 122 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC11O43248 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC11O43248 AP000907.1-201ENST00000428428 510 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXC11O43248 AC087650.1-201ENST00000431445 468 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AL159987.2-201ENST00000432754 307 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AC092641.1-201ENST00000440229 772 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXC11O43248 SSXP4-201ENST00000451349 245 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 RNA5SP269-201ENST00000459032 137 ntBASIC3.77□□□□□ -1.81
HOXC11O43248 RNA5SP310-201ENST00000459084 116 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms