Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.8□□□□□ -2.12
HMGB3O15347 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC1.8□□□□□ -2.12
HMGB3O15347 OR4K7P-201ENST00000580232 945 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC1.8□□□□□ -2.12
HMGB3O15347 VN1R90P-201ENST00000595717 726 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 AL020997.3-201ENST00000602843 359 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 AL355877.2-201ENST00000603670 358 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 AC006023.1-201ENST00000603944 259 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 ATP1B3P1-201ENST00000605365 821 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
HMGB3O15347 MIR8057-201ENST00000620957 69 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 AC090772.4-201ENST00000623599 362 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 MIR1291-201ENST00000627649 87 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 MTND5P1-201ENST00000445440 1375 ntBASIC1.8□□□□□ -2.12
HMGB3O15347 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HMGB3O15347 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.79□□□□□ -2.12
HMGB3O15347 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC1.79□□□□□ -2.12
HMGB3O15347 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
HMGB3O15347 SNORA71.3-201ENST00000362582 128 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 SNORA51.11-201ENST00000384442 131 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AC016769.2-201ENST00000414815 475 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 Z85995.1-201ENST00000415547 335 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC1.79□□□□□ -2.12
HMGB3O15347 AC105272.1-201ENST00000438604 198 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC1.79□□□□□ -2.12
HMGB3O15347 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC1.79□□□□□ -2.12
HMGB3O15347 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.79□□□□□ -2.12
HMGB3O15347 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC1.79□□□□□ -2.12
HMGB3O15347 RNU6-416P-201ENST00000516265 103 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AC022634.1-201ENST00000520765 532 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 IGJP1-201ENST00000522682 475 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 TRAV11-201ENST00000539512 339 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AC011611.5-201ENST00000552477 578 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC1.79□□□□□ -2.12
HMGB3O15347 AC007375.1-201ENST00000554513 578 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 APOOP1-201ENST00000604695 592 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AL159169.3-201ENST00000608871 561 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AC013562.2-201ENST00000611632 603 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 VN1R74P-201ENST00000613259 503 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AC073569.3-201ENST00000619055 682 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC1.79□□□□□ -2.12
HMGB3O15347 AC034229.5-201ENST00000624258 185 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 AP000553.5-201ENST00000641933 54 ntBASIC1.79□□□□□ -2.12
HMGB3O15347 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC1.78□□□□□ -2.12
HMGB3O15347 DDX10P1-201ENST00000448545 1933 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
HMGB3O15347 KPNA2P1-201ENST00000458289 1591 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
HMGB3O15347 MIR17-201ENST00000385012 84 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 MIR34B-201ENST00000385076 84 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 RNU6-220P-201ENST00000390919 107 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 RNU6-1328P-201ENST00000410938 106 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 SPA17P1-201ENST00000416656 452 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 NDUFB4P7-201ENST00000423198 363 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 CYCSP32-201ENST00000440548 321 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC1.78□□□□□ -2.12
HMGB3O15347 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 RNU6-717P-201ENST00000459076 104 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 FTH1P2-201ENST00000466086 412 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 SUMO2P6-201ENST00000505273 288 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC1.78□□□□□ -2.12
HMGB3O15347 RN7SKP132-201ENST00000516001 208 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 SCARNA17.1-201ENST00000516211 143 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 SCARNA17.2-201ENST00000516334 143 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 RNA5SP200-201ENST00000516360 103 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 MIR514B-201ENST00000516774 80 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 SNORA48.10-201ENST00000516965 160 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 MTCYBP27-201ENST00000555160 670 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 GTF2IP8-201ENST00000560687 584 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 MTCO1P40-201ENST00000574371 625 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC1.78□□□□□ -2.12
HMGB3O15347 AC008739.3-201ENST00000603262 127 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 SCARNA17.4-201ENST00000614296 143 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC1.78□□□□□ -2.12
HMGB3O15347 AL137790.1-201ENST00000634283 177 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 OR8B1P-202ENST00000641132 1178 ntBASIC1.78□□□□□ -2.12
HMGB3O15347 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
HMGB3O15347 AC080128.1-201ENST00000474389 1917 ntBASIC1.78□□□□□ -2.13
HMGB3O15347 CENPCP1-201ENST00000533085 2578 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 CCT4P2-201ENST00000233836 1548 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC1.77□□□□□ -2.13
HMGB3O15347 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HMGB3O15347 MTND4P27-201ENST00000450813 1354 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 AC010329.5-201ENST00000623497 2174 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
HMGB3O15347 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HMGB3O15347 SNORA51.6-201ENST00000384151 125 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 MIR135A2-201ENST00000384854 100 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 AL035405.1-201ENST00000400795 710 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 AL359511.1-201ENST00000402970 211 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 AL355615.1-201ENST00000406187 641 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 HNRNPDLP1-201ENST00000412834 550 ntBASIC1.77□□□□□ -2.13
HMGB3O15347 OR51A3P-201ENST00000413596 924 ntBASIC1.77□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms