| BCL9 | O00512 | AL109809.4-201 | ENST00000603520 | 2185 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| BCL9 | O00512 | SYT14-204 | ENST00000472886 | 2966 nt | APPRIS P3 TSL 1 (best) BASIC | 2.37 | □□□□□ -2.03 | | |
| BCL9 | O00512 | SERPINI2-206 | ENST00000471111 | 1331 nt | APPRIS P1 TSL 1 (best) BASIC | 2.37 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RNU6-799P-201 | ENST00000363567 | 107 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | BTLA-202 | ENST00000383680 | 726 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RNU1-57P-201 | ENST00000384491 | 166 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | STAP1-202 | ENST00000396225 | 1146 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | DEFB130A-201 | ENST00000400079 | 240 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL121972.1-201 | ENST00000402023 | 252 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | EIF1AXP1-201 | ENST00000419267 | 435 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RPS7P2-201 | ENST00000435134 | 607 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL590762.3-201 | ENST00000436372 | 640 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | DEFB130B-201 | ENST00000437818 | 240 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | DNAJC19P4-201 | ENST00000440115 | 345 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | NFIA-AS1-201 | ENST00000442027 | 384 nt | TSL 2 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | Z77249.1-201 | ENST00000444622 | 1175 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL021397.1-201 | ENST00000451806 | 248 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC096666.1-201 | ENST00000454965 | 348 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC025033.1-201 | ENST00000463883 | 194 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | MND1-203 | ENST00000504860 | 638 nt | TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC008652.1-201 | ENST00000505261 | 469 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC015771.1-201 | ENST00000527283 | 554 nt | TSL 4 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC079907.1-201 | ENST00000552707 | 374 nt | TSL 3 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | MIR8081-201 | ENST00000611533 | 95 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | PLCE1-AS2-213 | ENST00000620469 | 432 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | ZNF93-209 | ENST00000638737 | 1020 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC093536.2-201 | ENST00000565257 | 1406 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | DENND4A-209 | ENST00000635620 | 5887 nt | TSL 5 BASIC | 2.36 | □□□□□ -2.03 | | |
| BCL9 | O00512 | Y_RNA.122-201 | ENST00000363331 | 96 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RNU2-17P-201 | ENST00000410290 | 190 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL445989.1-202 | ENST00000418943 | 776 nt | TSL 2 BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | LINC01878-201 | ENST00000434559 | 769 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | Z73417.1-201 | ENST00000447373 | 778 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RPS24P6-201 | ENST00000452670 | 400 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | snoU13.7-201 | ENST00000459220 | 104 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RPS23P3-201 | ENST00000470993 | 430 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | SYPL1P1-201 | ENST00000473622 | 768 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC087879.1-201 | ENST00000474343 | 374 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | HMGB1P22-201 | ENST00000505315 | 124 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | LINC02229-201 | ENST00000508486 | 661 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC107982.2-201 | ENST00000577360 | 463 nt | TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | MIR4448-201 | ENST00000584360 | 86 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL035411.2-201 | ENST00000604022 | 421 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | KLRF1-207 | ENST00000617793 | 1096 nt | TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC006963.1-201 | ENST00000624003 | 1052 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | SATB1-AS1-258 | ENST00000629405 | 664 nt | TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | CEP57L1-203 | ENST00000368970 | 1680 nt | APPRIS ALT2 TSL 5 BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | ASPN-202 | ENST00000375544 | 2470 nt | APPRIS P1 TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RNU6-629P-201 | ENST00000384061 | 103 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL590084.1-201 | ENST00000407885 | 387 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | LINC02529-201 | ENST00000429657 | 772 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | HMGB1P31-201 | ENST00000437242 | 427 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC023512.1-201 | ENST00000444513 | 499 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | TPTE2P6-202 | ENST00000445572 | 1007 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC010301.1-201 | ENST00000473936 | 355 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC090096.1-201 | ENST00000489168 | 390 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC069439.2-201 | ENST00000496403 | 789 nt | TSL 2 BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | RPPH1-2P-201 | ENST00000516688 | 293 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | LINC01467-201 | ENST00000554211 | 1187 nt | TSL 1 (best) BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AC023824.4-201 | ENST00000562572 | 476 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | MYL12B-204 | ENST00000584539 | 1064 nt | APPRIS P1 TSL 3 BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | ZNF92P3-201 | ENST00000596594 | 954 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL121917.1-203 | ENST00000605534 | 577 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | AL110115.1-201 | ENST00000614396 | 364 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | C8orf59-213 | ENST00000619594 | 859 nt | APPRIS P1 TSL 1 (best) BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | HPVC1-201 | ENST00000629899 | 1198 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | SATB1-AS1-266 | ENST00000630271 | 813 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | ZNF37BP-203 | ENST00000452306 | 1352 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | LRRC6-212 | ENST00000618342 | 1754 nt | APPRIS ALT1 TSL 5 BASIC | 2.34 | □□□□□ -2.03 | | |
| BCL9 | O00512 | KTN1-207 | ENST00000438792 | 4449 nt | APPRIS ALT2 TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | RNU6-1293P-201 | ENST00000384077 | 107 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | LINC00434-201 | ENST00000423739 | 419 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | LINC01078-201 | ENST00000434832 | 387 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC072062.1-204 | ENST00000437897 | 1132 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | LINC02041-201 | ENST00000440726 | 246 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC092798.1-201 | ENST00000458542 | 409 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC010273.2-201 | ENST00000479830 | 438 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC090833.1-201 | ENST00000513853 | 806 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | SNORD116-30-201 | ENST00000516468 | 85 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | OSBPL9P3-201 | ENST00000534523 | 595 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | CBX3P4-201 | ENST00000538909 | 354 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | LINC01479-201 | ENST00000545520 | 509 nt | TSL 2 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | RPS3AP23-202 | ENST00000574601 | 686 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AP005380.1-201 | ENST00000584896 | 547 nt | TSL 4 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC068025.2-201 | ENST00000584958 | 419 nt | TSL 5 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC004542.1-201 | ENST00000602955 | 264 nt | TSL 3 BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AL133507.1-201 | ENST00000605269 | 557 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AL512598.1-201 | ENST00000610158 | 273 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | uc_338.5-201 | ENST00000611839 | 155 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC008083.4-201 | ENST00000615076 | 444 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | U6.48-201 | ENST00000618523 | 106 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | RNU6-156P-201 | ENST00000621869 | 107 nt | BASIC | 2.34 | □□□□□ -2.04 | | |
| BCL9 | O00512 | CLLU1-201 | ENST00000378485 | 3897 nt | APPRIS P1 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| BCL9 | O00512 | PABPC1P7-201 | ENST00000413177 | 1513 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| BCL9 | O00512 | CSN3-201 | ENST00000304954 | 836 nt | APPRIS P1 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| BCL9 | O00512 | SEC61A2-203 | ENST00000379017 | 600 nt | TSL 5 BASIC | 2.33 | □□□□□ -2.04 | | |
| BCL9 | O00512 | HSFY3P-201 | ENST00000444242 | 1191 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AC007557.1-201 | ENST00000451711 | 541 nt | TSL 2 BASIC | 2.33 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AL121584.1-201 | ENST00000453972 | 519 nt | TSL 3 BASIC | 2.33 | □□□□□ -2.04 | | |
| BCL9 | O00512 | AL606519.1-201 | ENST00000458146 | 580 nt | TSL 2 BASIC | 2.33 | □□□□□ -2.04 | | |