Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SYF2P1-201ENST00000550658 413 ntBASIC2.44□□□□□ -2.02
CCDC88BA6NC98 MIR6767-201ENST00000637302 66 ntBASIC2.44□□□□□ -2.02
CCDC88BA6NC98 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC88BA6NC98 SNORD114-22-201ENST00000365423 72 ntBASIC2.43□□□□□ -2.02
CCDC88BA6NC98 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.43□□□□□ -2.02
CCDC88BA6NC98 RPS6P15-201ENST00000431996 751 ntBASIC2.43□□□□□ -2.02
CCDC88BA6NC98 AC010683.1-201ENST00000473673 378 ntBASIC2.43□□□□□ -2.02
CCDC88BA6NC98 AC034222.1-201ENST00000494052 532 ntBASIC2.43□□□□□ -2.02
CCDC88BA6NC98 AC084364.2-201ENST00000546924 395 ntBASIC2.43□□□□□ -2.02
CCDC88BA6NC98 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.43□□□□□ -2.02
CCDC88BA6NC98 AC007620.3-201ENST00000608131 497 ntBASIC2.43□□□□□ -2.02
CCDC88BA6NC98 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.43□□□□□ -2.02
CCDC88BA6NC98 AC121333.1-201ENST00000567488 2709 ntBASIC2.42□□□□□ -2.02
CCDC88BA6NC98 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC88BA6NC98 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC88BA6NC98 GTF2IP7-202ENST00000436677 309 ntBASIC2.42□□□□□ -2.02
CCDC88BA6NC98 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.42□□□□□ -2.02
CCDC88BA6NC98 AL121594.1-201ENST00000475906 575 ntBASIC2.42□□□□□ -2.02
CCDC88BA6NC98 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.42□□□□□ -2.02
CCDC88BA6NC98 AC103710.2-202ENST00000641454 2853 ntBASIC2.42□□□□□ -2.02
CCDC88BA6NC98 RNU6-461P-201ENST00000364195 107 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 RNU1-93P-201ENST00000364704 169 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AL451074.3-201ENST00000437709 472 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 OR10R1P-201ENST00000441524 1141 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AC009238.1-201ENST00000442165 424 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AC009237.6-201ENST00000446969 424 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AC034244.1-201ENST00000507687 207 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AC008015.1-201ENST00000555505 465 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 MIR4452-201ENST00000583004 71 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AC080078.3-201ENST00000605407 463 ntBASIC2.41□□□□□ -2.02
CCDC88BA6NC98 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.4□□□□□ -2.02
CCDC88BA6NC98 RAC1P5-201ENST00000512182 576 ntBASIC2.4□□□□□ -2.02
CCDC88BA6NC98 MIR5694-201ENST00000581190 76 ntBASIC2.4□□□□□ -2.02
CCDC88BA6NC98 OR10AB1P-201ENST00000609613 938 ntBASIC2.4□□□□□ -2.02
CCDC88BA6NC98 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC88BA6NC98 AL136164.4-201ENST00000625013 2135 ntBASIC2.4□□□□□ -2.03
CCDC88BA6NC98 AL596028.1-201ENST00000326971 197 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 RNU6-582P-201ENST00000362989 107 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 RNA5SP363-201ENST00000365072 115 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AC092436.3-201ENST00000511788 257 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 TRAV28-201ENST00000557548 323 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AC023813.2-201ENST00000564321 469 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AP001180.3-201ENST00000582221 145 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 RN7SL622P-201ENST00000585292 275 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 OR4G1P-203ENST00000641984 1631 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 HMGB1P45-201ENST00000435986 653 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 HMGN2P21-201ENST00000447764 270 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 HMGN2P13-201ENST00000476476 274 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AL133216.2-202ENST00000634512 349 ntBASIC2.39□□□□□ -2.03
CCDC88BA6NC98 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC88BA6NC98 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AC011477.1-204ENST00000623416 1325 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 RNU4-51P-201ENST00000364206 140 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 RPL21P1-201ENST00000399532 476 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AL365400.1-201ENST00000431854 640 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 RPS4XP11-201ENST00000446897 772 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 ATP5EP1-201ENST00000510257 156 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AC006499.2-201ENST00000513470 337 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AP003033.1-201ENST00000527244 415 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AP005435.4-201ENST00000529514 284 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 AC067838.1-201ENST00000606064 577 ntBASIC2.37□□□□□ -2.03
CCDC88BA6NC98 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC88BA6NC98 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 PABPC1P9-201ENST00000426076 1612 ntBASIC2.36□□□□□ -2.03
CCDC88BA6NC98 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 ANAPC10P1-201ENST00000395991 556 ntBASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AL136133.1-201ENST00000413694 376 ntBASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 SSXP4-201ENST00000451349 245 ntBASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC88BA6NC98 AC104472.2-201ENST00000469035 601 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms