Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 AK6P2-201ENST00000549020 471 ntBASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 MIR15A-201ENST00000607334 83 ntBASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 PACRG-210ENST00000611387 279 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 AC099506.2-201ENST00000623074 221 ntBASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC7.5□□□□□ -1.21
CCDC61Q9Y6R9 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 Y_RNA.75-201ENST00000362927 97 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 SNORA17.1-201ENST00000362945 126 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 RNU6-239P-201ENST00000390990 99 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 RN7SKP216-201ENST00000411050 312 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 CYCSP33-201ENST00000414485 327 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AC079354.2-201ENST00000453523 154 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AC053481.1-201ENST00000467217 306 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 RPL21P9-201ENST00000556149 474 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 MIR4436B2-201ENST00000581415 91 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 MIR4436B1-201ENST00000583272 91 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 AC005828.6-201ENST00000606610 232 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 MIR6748-201ENST00000610433 71 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC7.49□□□□□ -1.21
CCDC61Q9Y6R9 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 AL627309.5-201ENST00000484859 4860 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 RNU6-989P-201ENST00000362756 107 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 Y_RNA.238-201ENST00000364441 102 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 Y_RNA.412-201ENST00000384001 104 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 RNU6-926P-201ENST00000384075 107 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 MIR578-201ENST00000384828 96 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 RPS11P7-201ENST00000442125 465 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 Y_RNA.694-201ENST00000516677 117 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 RN7SL652P-201ENST00000577769 300 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 MIR548AC-201ENST00000585049 88 ntBASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CCDC61Q9Y6R9 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 AC135776.4-201ENST00000624300 1904 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 RNU6-653P-201ENST00000363074 106 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 RNU6-476P-201ENST00000384726 107 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 RNU6-817P-201ENST00000391083 104 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 RNU6ATAC21P-201ENST00000408656 126 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 Y_RNA.625-201ENST00000411256 107 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 AL390729.2-201ENST00000416137 156 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 AP004607.2-201ENST00000533949 322 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 AL390726.5-202ENST00000564800 256 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 AC011447.4-201ENST00000587562 111 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 AC123912.5-201ENST00000605470 343 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 MIR6129-201ENST00000616087 109 ntBASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 DLD-214ENST00000639772 421 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC61Q9Y6R9 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC7.47□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 116.9 ms