Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC006020.1-201ENST00000420179 1854 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 DEFB108F-201ENST00000344638 222 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 Y_RNA.88-201ENST00000363029 99 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 RNA5SP189-201ENST00000364920 115 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 SMIM11P1-201ENST00000369586 178 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 Y_RNA.390-201ENST00000383932 102 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 RNU6-701P-201ENST00000384059 107 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 MIR105-2-201ENST00000385083 81 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 SPTLC1P2-201ENST00000407089 121 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 RNA5SP306-201ENST00000411087 107 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 RPL23AP27-201ENST00000415161 451 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 ZNF90P2-204ENST00000419323 1075 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 RPL21P66-201ENST00000426566 466 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AL360081.1-201ENST00000428299 555 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 HMGB1P31-201ENST00000437242 427 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 DPPA3P1-201ENST00000448050 469 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 CACYBPP2-201ENST00000453625 678 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 RNU7-182P-201ENST00000459009 62 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC078785.3-201ENST00000476607 425 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC233702.1-201ENST00000482905 502 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC105417.1-201ENST00000514691 285 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 IGKV1-32-201ENST00000519290 311 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AP004242.1-201ENST00000533701 349 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC006064.5-201ENST00000541782 248 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 MIR4775-201ENST00000581168 75 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC008752.3-201ENST00000588113 712 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC079587.1-201ENST00000603846 277 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC103710.3-201ENST00000608157 948 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC064801.1-201ENST00000612025 407 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC068831.8-201ENST00000620171 435 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AL589994.2-201ENST00000621124 579 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 MIR7702-201ENST00000621931 59 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC010300.1-201ENST00000600671 5134 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 AC006971.1-201ENST00000407916 4486 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 SDAD1P2-201ENST00000441308 2028 ntBASIC4.31□□□□□ -1.72
MKS1Q9NXB0 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
MKS1Q9NXB0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 SNORA31-201ENST00000362607 130 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RNU5A-1-201ENST00000362698 116 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RNU6-179P-201ENST00000363350 107 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RNY3P3-201ENST00000363816 102 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 SNORA62.1-201ENST00000364287 154 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 SNORA51.2-201ENST00000364595 132 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RNU6-996P-201ENST00000365438 107 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AL161631.1-201ENST00000417933 486 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 USP9YP9-201ENST00000429406 715 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 MTCO3P18-201ENST00000440206 761 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 CEACAMP7-201ENST00000444105 496 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC020550.1-201ENST00000447385 163 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC114755.5-201ENST00000447760 831 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RNU7-170P-201ENST00000459303 61 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RPL9P32-201ENST00000464118 620 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 GMFBP1-201ENST00000467831 427 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC092451.1-201ENST00000480211 153 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RPS29P25-201ENST00000481709 171 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RPL23AP55-201ENST00000498163 452 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 SNORA31.8-201ENST00000516327 108 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC103843.2-201ENST00000530523 682 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC091042.1-201ENST00000579213 173 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC013244.1-201ENST00000604279 193 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC110741.2-201ENST00000605278 268 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC012603.1-201ENST00000606424 528 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.3□□□□□ -1.72
MKS1Q9NXB0 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC4.3□□□□□ -1.72
MKS1Q9NXB0 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms