Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 MIR6075-201ENST00000620782 95 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC067931.1-201ENST00000624190 671 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 ADAM5-202ENST00000399789 1942 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 API5P2-201ENST00000397055 1498 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.132-201ENST00000363421 102 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 RN7SKP44-201ENST00000363602 316 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.212-201ENST00000364177 102 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 RNA5SP283-201ENST00000365604 119 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.378-201ENST00000365652 113 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 SNORA24.1-201ENST00000384401 135 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 SNORD116-29-201ENST00000384516 83 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC104333.2-201ENST00000422630 192 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC090686.1-201ENST00000481577 749 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL132838.2-201ENST00000492041 314 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC005741.1-201ENST00000511094 432 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.682-201ENST00000516457 100 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 IGKV2D-36-201ENST00000518643 226 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC109635.4-202ENST00000531666 412 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC024220.1-201ENST00000603675 484 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL670379.6-201ENST00000603753 252 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL670379.11-201ENST00000604059 253 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AC008162.1-201ENST00000604718 254 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL670379.1-201ENST00000604752 252 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL670379.5-201ENST00000605253 252 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL670379.12-201ENST00000605291 253 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL670379.8-201ENST00000605353 252 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 CTHRC1P1-201ENST00000605383 469 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL670379.7-201ENST00000605823 252 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL357559.1-201ENST00000622228 274 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 AL137003.2-201ENST00000606924 2538 ntBASIC5.7□□□□□ -1.5
CCDC87Q9NVE4 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 FAM91A3P-201ENST00000456826 2544 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 MIR369-201ENST00000362155 70 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.145-201ENST00000363527 102 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 Y_RNA.167-201ENST00000363735 109 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC019155.1-201ENST00000382242 574 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 RNU4-65P-201ENST00000410473 140 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 RNU2-47P-201ENST00000410649 186 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 RN7SKP159-201ENST00000410657 292 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AL139396.1-201ENST00000421137 167 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC018630.2-202ENST00000422992 927 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 RPL7P46-201ENST00000425129 740 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 PSMA2P3-201ENST00000429685 675 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 ELOCP18-201ENST00000434209 337 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 RPL23AP52-201ENST00000439311 478 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 BTF3P6-201ENST00000448054 499 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC012671.1-201ENST00000451912 203 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 ALG13-211ENST00000473389 693 ntTSL 2 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 RN7SL432P-201ENST00000484057 298 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC104806.1-201ENST00000508720 308 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AP000763.2-201ENST00000540641 163 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 MIR3671-201ENST00000580455 88 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC006254.3-201ENST00000603353 884 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AL008729.2-201ENST00000606393 473 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 AC140479.6-201ENST00000633535 357 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 MTND4LP32-201ENST00000636111 270 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 TPTE2P4-201ENST00000258589 1605 ntBASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CCDC87Q9NVE4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AC000374.1-201ENST00000434698 1745 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 AL158163.1-201ENST00000603915 1649 ntBASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC87Q9NVE4 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms