Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
TDP1Q9NUW8 SCN1A-220ENST00000641603 12506 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 SNORA60-201ENST00000362396 134 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 RNU6-223P-201ENST00000362830 107 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 MIR124-3-201ENST00000384866 87 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AL136372.1-201ENST00000403060 228 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 RAP1BP3-201ENST00000407180 549 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 RPS3AP24-201ENST00000407896 734 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 RNU4-6P-201ENST00000410804 122 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 SDCBPP3-201ENST00000419629 891 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 CALM1P1-201ENST00000442082 433 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 RNU7-63P-201ENST00000459054 62 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC233702.1-201ENST00000482905 502 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC146944.2-203ENST00000502493 354 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC008549.1-201ENST00000512900 643 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC139495.1-202ENST00000513164 354 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 Y_RNA.702-201ENST00000516843 96 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 RNU1-45P-201ENST00000517191 141 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AL034351.1-201ENST00000605288 668 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 MIR6500-201ENST00000622700 86 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 AC243312.2-201ENST00000623340 601 ntBASIC4.27□□□□□ -1.73
TDP1Q9NUW8 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
TDP1Q9NUW8 RNU4-48P-201ENST00000365559 182 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 RNU6-606P-201ENST00000384721 111 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 RWDD4P2-201ENST00000426392 563 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AL691449.1-201ENST00000426570 421 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 MTATP6P16-201ENST00000434543 526 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 DDX3P2-201ENST00000446138 111 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 CACYBPP2-201ENST00000453625 678 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AL356010.1-201ENST00000456364 102 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC093278.1-201ENST00000494700 600 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AP002812.1-201ENST00000495378 474 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 SNORA67.7-201ENST00000516664 135 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AF235103.2-201ENST00000525753 346 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC123904.3-201ENST00000547218 814 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC125611.2-201ENST00000551907 647 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 CBX3P5-201ENST00000552017 521 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC055876.1-202ENST00000567053 138 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 MIR4429-201ENST00000580105 73 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC005730.3-201ENST00000583067 366 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 MIR3158-1-201ENST00000583596 81 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 MIR92B-201ENST00000607575 96 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 RMST_3.1-201ENST00000611651 109 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 TUG1_2.1-201ENST00000614234 87 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AL354950.2-201ENST00000617939 290 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC024940.5-201ENST00000622889 474 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC138649.5-201ENST00000637456 137 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 AC024614.3-201ENST00000637860 256 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 DDX10P1-201ENST00000448545 1933 ntBASIC4.26□□□□□ -1.73
TDP1Q9NUW8 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
TDP1Q9NUW8 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC090337.1-201ENST00000579651 2074 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC092435.4-201ENST00000623012 4159 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms