Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.06□□□□□ -1.92
CCDC28BQ9BUN5 MAPK10-322ENST00000641485 4530 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL161912.2-201ENST00000565707 3007 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 ZNF833P-201ENST00000424938 1494 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL513185.3-201ENST00000433335 1300 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 RNU6-28P-201ENST00000362378 107 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 RNU6-660P-201ENST00000364566 109 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 SNORD51-201ENST00000384320 80 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 Y_RNA.493-201ENST00000384422 102 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 MIR181B1-201ENST00000385240 110 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 RNU6-837P-201ENST00000391056 108 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL021407.1-201ENST00000404531 386 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL138880.1-201ENST00000405824 642 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 RNA5SP129-201ENST00000410276 118 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 RNU2-15P-201ENST00000410692 191 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC007742.1-201ENST00000425789 329 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 LAMTOR3P1-201ENST00000428620 370 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 ELOCP26-201ENST00000436067 329 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 SDCBPP1-201ENST00000440192 890 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC118469.1-201ENST00000442943 488 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC002381.1-201ENST00000447049 280 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC009961.3-201ENST00000449832 765 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL445669.2-201ENST00000454425 421 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 BX322784.1-201ENST00000455793 1077 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC021678.1-201ENST00000505195 936 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC022447.3-201ENST00000506865 495 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 EEF1B2P4-201ENST00000551398 348 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 NBR2-204ENST00000587322 63 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 BBIP1P1-201ENST00000602999 279 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC067959.1-201ENST00000604334 379 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL162713.1-201ENST00000604480 262 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AL390208.1-201ENST00000605885 644 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 AC091965.5-201ENST00000624785 342 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 Z83843.1-201ENST00000604070 3685 ntBASIC3.05□□□□□ -1.92
CCDC28BQ9BUN5 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AP003122.5-201ENST00000527668 3766 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AL161781.1-201ENST00000354277 403 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 RNU6-989P-201ENST00000362756 107 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 RNU6-501P-201ENST00000364072 100 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 SNORA70.2-201ENST00000364506 135 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AL590004.2-201ENST00000404787 371 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 RNA5SP274-201ENST00000410484 108 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 HMGN1P24-201ENST00000412282 298 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 HMGB1P11-201ENST00000413899 637 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 BX842559.1-201ENST00000419615 532 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 SEPT2P1-201ENST00000419651 180 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 C4BPAP2-201ENST00000428434 478 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC244035.1-201ENST00000430042 390 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC129850.1-201ENST00000436203 508 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AL512286.1-201ENST00000439244 400 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AL831737.1-201ENST00000441288 271 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 TPT1P12-201ENST00000448968 492 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 HMGB1P15-201ENST00000453854 435 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 RPL30P9-201ENST00000465586 330 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 RPS27AP9-201ENST00000477681 438 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 SNORD59.2-201ENST00000516873 68 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC136624.4-201ENST00000573044 370 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC090615.1-201ENST00000577519 154 ntBASIC3.04□□□□□ -1.92
CCDC28BQ9BUN5 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 106.4 ms