Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL035410.1-201ENST00000427409 427 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USP28Q96RU2 LARP1BP3-201ENST00000437229 869 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 RPL23AP16-201ENST00000441715 421 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.39□□□□□ -1.87
USP28Q96RU2 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.39□□□□□ -1.87
USP28Q96RU2 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.39□□□□□ -1.87
USP28Q96RU2 snoU13.4-201ENST00000458916 104 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 FTH1P2-201ENST00000466086 412 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 RPS15AP17-201ENST00000470598 390 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 RN7SL601P-201ENST00000471221 293 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC072039.1-201ENST00000477611 581 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 RPS29P2-201ENST00000479278 136 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC006445.1-201ENST00000491925 405 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 POU5F1P7-201ENST00000508759 541 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC004062.1-201ENST00000509926 645 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC060788.1-201ENST00000521318 469 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USP28Q96RU2 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.39□□□□□ -1.87
USP28Q96RU2 MIR5004-201ENST00000579078 107 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AP001029.3-201ENST00000588063 596 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AL355812.1-201ENST00000603215 216 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC008739.3-201ENST00000603262 127 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC025588.3-201ENST00000604182 274 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AC243773.3-201ENST00000613270 256 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC012314.7-201ENST00000619693 93 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC079228.1-201ENST00000624774 1049 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
USP28Q96RU2 AC011477.1-204ENST00000623416 1325 ntBASIC3.39□□□□□ -1.87
USP28Q96RU2 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
USP28Q96RU2 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.39□□□□□ -1.87
USP28Q96RU2 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 GABRG2-229ENST00000641017 3628 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AP002907.1-201ENST00000606361 1430 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 RPL21P132-201ENST00000331267 462 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 RNVU1-3-201ENST00000364313 161 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 Y_RNA.302-201ENST00000364997 102 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 RNU5A-2P-201ENST00000384337 116 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 DHFRP6-201ENST00000401776 268 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 TPMTP3-201ENST00000411928 735 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AL451074.5-201ENST00000415894 435 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AL953862.1-201ENST00000423016 168 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 YME1L1P1-201ENST00000429435 297 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 TAF9P1-201ENST00000445421 515 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.38□□□□□ -1.87
USP28Q96RU2 ZNF114P1-201ENST00000453500 292 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 TAF9P2-201ENST00000454958 515 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 RPL30P9-201ENST00000465586 330 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 TMEM251P1-201ENST00000503717 318 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 RNU6-150P-201ENST00000516237 95 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 RNU6-678P-201ENST00000516832 109 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 AC104986.1-201ENST00000517978 436 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 ZNF705CP-201ENST00000530515 889 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AC008127.2-201ENST00000549925 1075 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AC034105.3-201ENST00000565294 442 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.38□□□□□ -1.87
USP28Q96RU2 MAGOH2P-202ENST00000584384 429 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AC135507.1-201ENST00000607214 561 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC3.38□□□□□ -1.87
USP28Q96RU2 AL356266.1-201ENST00000623311 483 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 AC231657.1-201ENST00000624313 397 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
USP28Q96RU2 AC130650.2-201ENST00000618736 2403 ntBASIC3.38□□□□□ -1.87
USP28Q96RU2 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP28Q96RU2 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
USP28Q96RU2 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.37□□□□□ -1.87
USP28Q96RU2 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP28Q96RU2 AL079305.1-201ENST00000623159 3008 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 ZNF833P-201ENST00000424938 1494 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 AP003122.5-201ENST00000527668 3766 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 Y_RNA.18-201ENST00000362461 102 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 RNU6-777P-201ENST00000364265 104 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
USP28Q96RU2 SNORA51.6-201ENST00000384151 125 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 MT-TH-201ENST00000387441 69 ntBASIC3.37□□□□□ -1.87
USP28Q96RU2 U3.19-201ENST00000390893 196 ntBASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms