Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RN7SL442P-201ENST00000473804 320 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 TXNP6-201ENST00000510190 310 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 RAC1P5-201ENST00000512182 576 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 SNORA31.22-201ENST00000517204 135 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 OR5G4P-201ENST00000525251 760 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AL845331.3-202ENST00000562856 261 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC069431.2-201ENST00000604149 1099 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC013412.1-201ENST00000610687 192 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC073308.1-201ENST00000623696 305 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 AC091903.1-201ENST00000624322 454 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 MIR622-201ENST00000638396 96 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 FAM35CP-201ENST00000554755 2470 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 OR4G2P-202ENST00000641004 1759 ntBASIC3.15□□□□□ -1.91
HDDC3Q8N4P3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AP000526.1-201ENST00000603308 1388 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AL161781.1-201ENST00000354277 403 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 RNU6-1078P-201ENST00000364522 103 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 MIR514A1-201ENST00000385133 98 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AL356320.2-201ENST00000417263 507 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AL139281.1-201ENST00000422120 335 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AC018630.2-202ENST00000422992 927 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 NDUFB4P7-201ENST00000423198 363 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 PPP1R11P2-201ENST00000423543 382 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 USP9YP11-201ENST00000427537 717 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AC108734.1-201ENST00000439549 399 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 RNU6-420P-201ENST00000458780 107 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 snoU13.28-201ENST00000459235 104 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 MTND4LP3-201ENST00000468320 276 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 RPL31P50-201ENST00000471002 296 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AC021146.5-201ENST00000503544 545 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 RNU6-1256P-201ENST00000516539 103 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 RNU6-840P-201ENST00000517275 65 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 DUXAP4-201ENST00000603046 613 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 U73023.1-201ENST00000603134 700 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 MIR4275-201ENST00000636486 87 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 AC092435.3-201ENST00000565538 3654 ntBASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.14□□□□□ -1.91
HDDC3Q8N4P3 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 RNU6-343P-201ENST00000364709 104 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 MIR325-201ENST00000385260 98 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 MIR1284-201ENST00000408337 120 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 RPS7P13-201ENST00000413955 498 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC008850.1-201ENST00000427546 362 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AL512844.2-201ENST00000433990 593 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 NANOGP2-201ENST00000435391 727 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 ARPC3P1-201ENST00000437218 533 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC016696.1-201ENST00000446949 318 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AL049829.1-201ENST00000465411 156 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC109445.1-201ENST00000512356 383 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC010374.2-201ENST00000512933 535 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC021451.1-201ENST00000523498 1129 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 DEFB131D-201ENST00000526803 184 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 ERP27-202ENST00000540097 993 ntTSL 2 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC124947.2-202ENST00000552735 133 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 MTCYBP23-201ENST00000558717 1102 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC013553.2-201ENST00000604244 589 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC107294.3-201ENST00000609211 526 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC090132.2-201ENST00000615881 347 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 MIR6715A-201ENST00000615929 79 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AP003485.2-201ENST00000623636 610 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 AC090617.7-201ENST00000623952 126 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms