Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RN7SKP162-201ENST00000363605 345 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-534P-201ENST00000364877 106 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 Y_RNA.295-201ENST00000364918 102 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-1283P-201ENST00000365314 105 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-877P-201ENST00000383868 107 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 SNORA69-201ENST00000383895 132 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RNU6-190P-201ENST00000384154 102 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 U3.25-201ENST00000391209 220 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 SNORA11.3-201ENST00000408471 128 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RNU6ATAC21P-201ENST00000408656 126 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC009480.2-201ENST00000422916 432 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 HNRNPA3P4-201ENST00000427514 803 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 ARF4P2-201ENST00000430209 526 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 MTND1P18-201ENST00000448191 573 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC009127.1-201ENST00000467090 155 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RPL23AP14-201ENST00000468281 468 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RPL31P58-201ENST00000469001 379 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RN7SL738P-201ENST00000470264 297 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL049830.2-201ENST00000480072 201 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AL163973.1-201ENST00000484753 577 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC104164.2-201ENST00000496953 495 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC010350.1-201ENST00000504908 231 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RN7SKP60-201ENST00000516985 239 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 IGLV2-28-201ENST00000520681 304 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 IGKV3D-34-201ENST00000522638 302 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 IGHVIII-67-4-201ENST00000524281 296 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC103843.2-201ENST00000530523 682 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC234778.2-201ENST00000566241 354 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AP000907.4-201ENST00000604143 237 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AP001521.2-201ENST00000608772 546 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 MIR6768-201ENST00000610734 72 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC130324.3-201ENST00000614165 542 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 SNORA11.6-201ENST00000619030 128 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 YWHAEP7-203ENST00000622054 312 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC091905.2-201ENST00000623143 306 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AC007546.2-201ENST00000623996 360 ntBASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CCDC28AQ8IWP9 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.81
CCDC28AQ8IWP9 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.81
CCDC28AQ8IWP9 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RNU1-18P-201ENST00000363062 164 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 Y_RNA.255-201ENST00000364581 97 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-1029P-201ENST00000384109 107 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 SNORA3C-201ENST00000408792 125 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-908P-201ENST00000410160 94 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 ATP6V1G1P7-201ENST00000415853 349 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 USP9YP9-201ENST00000429406 715 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC122718.1-201ENST00000439448 744 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 RPL23AP43-201ENST00000446445 471 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 FABP5P13-201ENST00000452144 328 ntBASIC3.71□□□□□ -1.82
CCDC28AQ8IWP9 CACYBPP2-201ENST00000453625 678 ntBASIC3.71□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms