Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL136360.1-201ENST00000503377 1900 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 Z99496.1-201ENST00000469424 1477 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 MAPK10-266ENST00000641066 6555 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 AC004944.1-201ENST00000517807 3059 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 SNORA51.6-201ENST00000384151 125 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 MIR217-201ENST00000384817 110 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 RNU6-712P-201ENST00000410558 100 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 RNU2-25P-201ENST00000411041 191 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 UBE2V1P6-201ENST00000430840 422 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.17□□□□□ -2.06
FOXA1P55317 COX6CP18-201ENST00000448769 222 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 RPS20P24-201ENST00000457473 361 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA1P55317 AC093767.1-201ENST00000504523 156 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC2.17□□□□□ -2.06
FOXA1P55317 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC023632.1-201ENST00000518463 375 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA1P55317 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA1P55317 AP001317.1-201ENST00000531194 960 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA1P55317 AC126177.3-201ENST00000551839 688 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 DNAJC8P1-201ENST00000554535 372 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 SULT1C2P1-202ENST00000562418 459 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 MTND4LP25-201ENST00000570218 163 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
FOXA1P55317 DUXAP3-201ENST00000603616 594 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 AC008962.1-201ENST00000605729 304 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
FOXA1P55317 AL512506.2-201ENST00000624472 458 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA1P55317 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.17□□□□□ -2.06
FOXA1P55317 AC233263.6-201ENST00000631132 1963 ntBASIC2.17□□□□□ -2.06
FOXA1P55317 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC2.17□□□□□ -2.06
FOXA1P55317 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.17□□□□□ -2.06
FOXA1P55317 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.16□□□□□ -2.06
FOXA1P55317 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA1P55317 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA1P55317 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA1P55317 AC012321.1-201ENST00000561622 1588 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AL049780.3-201ENST00000624612 1583 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC2.16□□□□□ -2.06
FOXA1P55317 MIRLET7G-201ENST00000362280 84 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 RNA5SP289-201ENST00000362332 137 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 RNU6-1027P-201ENST00000383998 107 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 RPS4XP8-201ENST00000402039 771 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AL024474.1-201ENST00000404655 591 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC092634.6-201ENST00000418558 192 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 Z93242.1-201ENST00000427102 353 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 SUMO1P4-201ENST00000429430 302 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC116035.1-201ENST00000431057 517 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA1P55317 SNRPEP4-201ENST00000435815 279 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.16□□□□□ -2.06
FOXA1P55317 LSM1P1-201ENST00000438629 273 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 RABEPKP1-201ENST00000440529 1026 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA1P55317 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.16□□□□□ -2.06
FOXA1P55317 GTF2IP9-201ENST00000502460 301 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC093801.2-201ENST00000503966 1050 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC105914.1-201ENST00000511798 226 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 snoZ278.1-201ENST00000517059 112 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 MTCYBP20-201ENST00000524239 1129 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 OR4P1P-201ENST00000530808 1136 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC044913.1-201ENST00000557200 430 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC023825.1-201ENST00000566704 1030 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.16□□□□□ -2.06
FOXA1P55317 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA1P55317 RPL23AP78-201ENST00000599928 470 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AP003973.1-201ENST00000604639 691 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC013562.2-201ENST00000611632 603 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC008759.3-201ENST00000613300 508 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC008083.4-201ENST00000615076 444 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
FOXA1P55317 AC095031.1-201ENST00000623685 672 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.16□□□□□ -2.06
FOXA1P55317 AC243829.7-201ENST00000633081 225 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AC006927.2-201ENST00000639256 389 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 NUP58P1-201ENST00000502546 1738 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 DBF4P1-201ENST00000412976 1892 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 SUCLA2P2-201ENST00000417269 1309 ntBASIC2.16□□□□□ -2.06
FOXA1P55317 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
FOXA1P55317 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
FOXA1P55317 RNU5B-4P-201ENST00000363508 111 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 SNORA14A-201ENST00000364773 135 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 RNU6-657P-201ENST00000383904 107 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 U3.29-201ENST00000391296 212 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 ANAPC10P1-201ENST00000395991 556 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 AL603865.2-201ENST00000401679 213 ntBASIC2.15□□□□□ -2.07
FOXA1P55317 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms