Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 USP9YP36-201ENST00000424581 829 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 MTND1P31-201ENST00000449206 961 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 PAXBP1P1-201ENST00000449315 447 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC004924.1-201ENST00000480160 781 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 RPS4XP22-201ENST00000480755 780 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC104090.1-201ENST00000506341 1171 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC026801.2-201ENST00000515352 425 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 NDUFB9P3-201ENST00000521269 501 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 FAM60DP-201ENST00000524174 632 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 PDCL2P2-201ENST00000533651 189 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC090888.2-201ENST00000559765 1144 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC034105.3-201ENST00000565294 442 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 MIR4425-201ENST00000580572 84 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC112220.3-201ENST00000605502 502 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC002550.2-201ENST00000621246 394 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 AC011477.1-204ENST00000623416 1325 ntBASIC3.11□□□□□ -1.91
TNFRSF4P43489 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.11□□□□□ -1.91
TNFRSF4P43489 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
TNFRSF4P43489 DEFB108F-201ENST00000344638 222 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 RNU6-851P-201ENST00000384565 107 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 MIR493-201ENST00000385254 89 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 MTND4P13-201ENST00000402078 1023 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 RPS3AP24-201ENST00000407896 734 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 U3.42-201ENST00000408746 214 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 TRBV24OR9-2-201ENST00000416632 435 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 CETN4P-201ENST00000432407 469 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL592447.1-201ENST00000447592 540 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 MTND2P14-201ENST00000482139 351 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC083906.5-201ENST00000503722 328 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 RPL23AP94-201ENST00000512518 302 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 RNA5SP216-201ENST00000516111 123 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 RPL12P22-201ENST00000519073 490 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC239860.2-201ENST00000525886 270 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 DEFB108D-201ENST00000527787 222 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL163153.1-201ENST00000554223 283 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 DUXAP1-201ENST00000556632 463 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC087465.1-201ENST00000560574 245 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL596327.1-201ENST00000603629 213 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL031281.1-201ENST00000604049 488 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 AL133507.1-201ENST00000605269 557 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 AC007490.1-201ENST00000624321 703 ntBASIC3.1□□□□□ -1.91
TNFRSF4P43489 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
TNFRSF4P43489 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.1□□□□□ -1.91
TNFRSF4P43489 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
TNFRSF4P43489 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
TNFRSF4P43489 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
TNFRSF4P43489 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
TNFRSF4P43489 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
TNFRSF4P43489 CUL1P1-201ENST00000509510 2425 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 RNU6-289P-201ENST00000364093 107 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 RNU6-359P-201ENST00000365466 108 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 FAT1P1-201ENST00000406588 507 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC083875.1-201ENST00000419509 405 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC092447.3-201ENST00000426027 686 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 MTATP6P4-201ENST00000427725 675 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 MTND1P32-201ENST00000433043 938 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 MTND1P26-201ENST00000440488 538 ntBASIC3.09□□□□□ -1.91
TNFRSF4P43489 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.09□□□□□ -1.91
TNFRSF4P43489 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
TNFRSF4P43489 EEF1E1P1-201ENST00000446998 430 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 178.9 ms