Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SOX3P41225 AC007496.3-201ENST00000624987 3443 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC032011.1-201ENST00000611703 1549 ntBASIC3.14□□□□□ -1.91
SOX3P41225 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 AC021755.1-201ENST00000559747 1447 ntBASIC3.14□□□□□ -1.91
SOX3P41225 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 U3.4-201ENST00000363352 213 ntBASIC3.14□□□□□ -1.91
SOX3P41225 RNA5SP267-201ENST00000364893 126 ntBASIC3.14□□□□□ -1.91
SOX3P41225 RNU6-805P-201ENST00000365643 106 ntBASIC3.14□□□□□ -1.91
SOX3P41225 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SOX3P41225 MTCYBP36-201ENST00000404146 440 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AL138880.1-201ENST00000405824 642 ntBASIC3.14□□□□□ -1.91
SOX3P41225 RN7SKP111-201ENST00000410349 271 ntBASIC3.14□□□□□ -1.91
SOX3P41225 RNA5SP293-201ENST00000410527 113 ntBASIC3.14□□□□□ -1.91
SOX3P41225 TOMM22P1-201ENST00000418578 312 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.14□□□□□ -1.91
SOX3P41225 RPL23AP82-202ENST00000427528 469 ntBASIC3.14□□□□□ -1.91
SOX3P41225 BX890604.2-201ENST00000427883 474 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.14□□□□□ -1.91
SOX3P41225 AC108734.1-201ENST00000439549 399 ntBASIC3.14□□□□□ -1.91
SOX3P41225 COX6CP2-201ENST00000444980 225 ntBASIC3.14□□□□□ -1.91
SOX3P41225 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 NPM1P49-201ENST00000448027 714 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC125238.1-201ENST00000448842 249 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC104308.1-201ENST00000454621 333 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.14□□□□□ -1.91
SOX3P41225 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC3.14□□□□□ -1.91
SOX3P41225 CENPBD1P1-201ENST00000464061 469 ntBASIC3.14□□□□□ -1.91
SOX3P41225 RN7SL330P-201ENST00000469709 307 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AP000797.1-201ENST00000478870 387 ntBASIC3.14□□□□□ -1.91
SOX3P41225 TMED11P-201ENST00000479478 690 ntBASIC3.14□□□□□ -1.91
SOX3P41225 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 AL358832.1-201ENST00000497800 389 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC078918.1-201ENST00000498515 228 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.14□□□□□ -1.91
SOX3P41225 AC116347.2-201ENST00000514912 523 ntBASIC3.14□□□□□ -1.91
SOX3P41225 SNORA70.19-201ENST00000516717 90 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC025881.1-201ENST00000518851 512 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC060788.1-201ENST00000521318 469 ntBASIC3.14□□□□□ -1.91
SOX3P41225 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
SOX3P41225 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.14□□□□□ -1.91
SOX3P41225 MTCYBP41-201ENST00000528913 1123 ntBASIC3.14□□□□□ -1.91
SOX3P41225 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.14□□□□□ -1.91
SOX3P41225 SETP2-201ENST00000553886 926 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.14□□□□□ -1.91
SOX3P41225 AC037471.2-201ENST00000564941 598 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC012414.6-201ENST00000568241 401 ntBASIC3.14□□□□□ -1.91
SOX3P41225 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.14□□□□□ -1.91
SOX3P41225 AC083760.1-201ENST00000589621 670 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC012065.4-201ENST00000602445 679 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.14□□□□□ -1.91
SOX3P41225 AL358072.1-201ENST00000604156 575 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC011451.2-201ENST00000604303 598 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC096577.2-201ENST00000611455 153 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AL158063.1-201ENST00000615349 536 ntBASIC3.14□□□□□ -1.91
SOX3P41225 AC093591.3-201ENST00000634516 308 ntBASIC3.14□□□□□ -1.91
SOX3P41225 U6.98-201ENST00000637157 84 ntBASIC3.14□□□□□ -1.91
SOX3P41225 ZNF826P-207ENST00000622273 1910 ntBASIC3.14□□□□□ -1.91
SOX3P41225 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
SOX3P41225 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
SOX3P41225 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SOX3P41225 MTND5P1-201ENST00000445440 1375 ntBASIC3.13□□□□□ -1.91
SOX3P41225 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
SOX3P41225 AC004925.1-201ENST00000624256 2706 ntBASIC3.13□□□□□ -1.91
SOX3P41225 RNU6-1155P-201ENST00000363554 107 ntBASIC3.13□□□□□ -1.91
SOX3P41225 Y_RNA.333-201ENST00000365274 102 ntBASIC3.13□□□□□ -1.91
SOX3P41225 PTMAP5-201ENST00000393073 333 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AC126124.2-201ENST00000413542 321 ntBASIC3.13□□□□□ -1.91
SOX3P41225 MTCO3P12-201ENST00000416718 547 ntBASIC3.13□□□□□ -1.91
SOX3P41225 BEND7P1-201ENST00000422058 457 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AL158156.1-201ENST00000422509 473 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.13□□□□□ -1.91
SOX3P41225 AC112653.1-201ENST00000443851 386 ntBASIC3.13□□□□□ -1.91
SOX3P41225 TAF9P1-201ENST00000445421 515 ntBASIC3.13□□□□□ -1.91
SOX3P41225 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SOX3P41225 RPS24P6-201ENST00000452670 400 ntBASIC3.13□□□□□ -1.91
SOX3P41225 TAF9P2-201ENST00000454958 515 ntBASIC3.13□□□□□ -1.91
SOX3P41225 MTCO1P42-201ENST00000457379 726 ntBASIC3.13□□□□□ -1.91
SOX3P41225 snoU13.24-201ENST00000458998 104 ntBASIC3.13□□□□□ -1.91
SOX3P41225 RPS27P29-201ENST00000463110 252 ntBASIC3.13□□□□□ -1.91
SOX3P41225 RN7SL601P-201ENST00000471221 293 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AL049830.2-201ENST00000480072 201 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AC092451.1-201ENST00000480211 153 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AC114967.1-201ENST00000504890 259 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AC005921.1-201ENST00000510589 286 ntBASIC3.13□□□□□ -1.91
SOX3P41225 MTND5P13-201ENST00000513046 1079 ntBASIC3.13□□□□□ -1.91
SOX3P41225 SNORA64.4-201ENST00000516632 81 ntBASIC3.13□□□□□ -1.91
SOX3P41225 RNU6-1003P-201ENST00000517099 105 ntBASIC3.13□□□□□ -1.91
SOX3P41225 SNORA31.20-201ENST00000517111 133 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AC107934.2-201ENST00000518653 310 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.13□□□□□ -1.91
SOX3P41225 AC104027.1-201ENST00000521887 300 ntBASIC3.13□□□□□ -1.91
SOX3P41225 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.91
SOX3P41225 AP001981.2-201ENST00000603241 418 ntBASIC3.13□□□□□ -1.91
SOX3P41225 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms