Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNRPEP7-201ENST00000438350 220 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 HSPE1P28-201ENST00000443139 211 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 ARPC3P5-201ENST00000448802 534 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 RPS20P24-201ENST00000457473 361 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AC010468.1-201ENST00000461022 817 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXC9P31274 AC034159.1-201ENST00000513885 583 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 MTND5P4-201ENST00000514978 288 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 RNA5SP216-201ENST00000516111 123 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 HSPA8P13-201ENST00000523715 472 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HOXC9P31274 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXC9P31274 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC9P31274 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXC9P31274 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXC9P31274 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC9P31274 AC110760.3-201ENST00000598794 467 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 RPL23AP92-201ENST00000603609 255 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AL139286.1-201ENST00000604465 483 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AC007619.2-201ENST00000605743 379 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AC080013.4-201ENST00000607624 649 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXC9P31274 AC103710.4-201ENST00000609301 899 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXC9P31274 U73479.1-201ENST00000618062 168 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXC9P31274 AC009039.2-201ENST00000624524 529 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC9P31274 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXC9P31274 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC9P31274 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC9P31274 AL513185.3-201ENST00000433335 1300 ntBASIC3.85□□□□□ -1.79
HOXC9P31274 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXC9P31274 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXC9P31274 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC9P31274 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXC9P31274 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXC9P31274 AL031985.3-201ENST00000565390 2449 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC9P31274 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXC9P31274 RNU6-989P-201ENST00000362756 107 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 SNORD56.3-201ENST00000363507 71 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 RNU6-878P-201ENST00000384578 110 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 RPS4XP8-201ENST00000402039 771 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 MIR320C1-201ENST00000408566 88 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 RNU2-52P-201ENST00000410680 190 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 RNU2-15P-201ENST00000410692 191 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 TPMTP3-201ENST00000411928 735 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC9P31274 AC019178.2-201ENST00000423595 505 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC019097.1-201ENST00000424783 735 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC063976.3-201ENST00000426849 329 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AL390023.1-201ENST00000428836 262 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 USP9YP7-201ENST00000436723 430 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 MTND5P14-201ENST00000441481 1267 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 MTND2P4-201ENST00000445034 1004 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC002381.1-201ENST00000447049 280 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.84□□□□□ -1.79
HOXC9P31274 USP9YP32-201ENST00000452432 430 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC9P31274 HMGB3P30-201ENST00000457863 606 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 RPL30P9-201ENST00000465586 330 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXC9P31274 AP001025.2-201ENST00000490908 477 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC9P31274 AC105313.1-201ENST00000509121 353 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC103783.1-201ENST00000520506 373 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 OR6C7P-201ENST00000547875 934 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC9P31274 AC107954.1-201ENST00000565906 727 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC9P31274 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXC9P31274 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXC9P31274 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXC9P31274 MTCYBP22-201ENST00000603788 447 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AL358072.1-201ENST00000604156 575 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AL035413.2-201ENST00000604801 525 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC105129.3-201ENST00000605455 485 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 RNA5SP108-201ENST00000605921 117 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC107214.2-201ENST00000608204 634 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC006329.2-201ENST00000611491 394 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC004009.2-201ENST00000623016 728 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 AC040168.1-201ENST00000623594 991 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXC9P31274 AL356473.1-201ENST00000406203 1408 ntBASIC3.84□□□□□ -1.79
HOXC9P31274 ELL2P3-201ENST00000457883 1602 ntBASIC3.84□□□□□ -1.8
HOXC9P31274 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
HOXC9P31274 AC012020.1-201ENST00000624541 1728 ntBASIC3.84□□□□□ -1.8
HOXC9P31274 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
HOXC9P31274 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.83□□□□□ -1.8
HOXC9P31274 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
HOXC9P31274 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC9P31274 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
HOXC9P31274 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
HOXC9P31274 HMGB1P11-201ENST00000413899 637 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.83□□□□□ -1.8
HOXC9P31274 RPL23AP39-201ENST00000415533 405 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 MTATP6P27-201ENST00000416987 621 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 MTCYBP24-201ENST00000420387 1106 ntBASIC3.83□□□□□ -1.8
HOXC9P31274 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms