Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 SAP18P1-201ENST00000512058 390 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 Vault.3-201ENST00000516676 95 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 RNU6-445P-201ENST00000516949 107 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.43□□□□□ -1.7
SMARCA1P28370 IGKV2D-23-201ENST00000518179 286 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.43□□□□□ -1.7
SMARCA1P28370 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.43□□□□□ -1.7
SMARCA1P28370 AC006270.2-201ENST00000578523 652 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.43□□□□□ -1.7
SMARCA1P28370 MIR5187-201ENST00000583479 76 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 SNRPGP15-201ENST00000600149 222 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 MIR98-201ENST00000606724 119 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AL590282.1-201ENST00000610379 1136 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC112204.3-201ENST00000623822 332 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC034229.5-201ENST00000624258 185 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AL159972.1-201ENST00000625150 448 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 EXOC5P1-201ENST00000510543 1969 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.43□□□□□ -1.7
SMARCA1P28370 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SMARCA1P28370 ZNF962P-201ENST00000443465 3140 ntBASIC4.43□□□□□ -1.7
SMARCA1P28370 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.42□□□□□ -1.7
SMARCA1P28370 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
SMARCA1P28370 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SMARCA1P28370 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SMARCA1P28370 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SMARCA1P28370 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
SMARCA1P28370 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.42□□□□□ -1.7
SMARCA1P28370 RNU6-1249P-201ENST00000363237 111 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 RNU6-335P-201ENST00000364563 113 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
SMARCA1P28370 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SMARCA1P28370 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AL590002.1-201ENST00000406554 418 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC007283.2-201ENST00000424739 197 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AL591419.1-201ENST00000427423 339 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 RPL7P2-201ENST00000427639 268 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC133104.1-201ENST00000429100 218 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 FCF1P1-201ENST00000432690 571 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.42□□□□□ -1.7
SMARCA1P28370 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SMARCA1P28370 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.42□□□□□ -1.7
SMARCA1P28370 MTND4P18-201ENST00000447010 465 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC006480.1-201ENST00000449887 378 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC007537.2-201ENST00000472093 511 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 MTAPP1-201ENST00000489154 819 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC019235.1-201ENST00000503847 207 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC009646.1-201ENST00000510455 318 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 NDUFB4P9-201ENST00000511646 388 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SMARCA1P28370 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SMARCA1P28370 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.42□□□□□ -1.7
SMARCA1P28370 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AL157700.1-201ENST00000561973 1432 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AL845331.3-202ENST00000562856 261 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AL137849.1-201ENST00000604767 169 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 RNU1-30P-201ENST00000606575 163 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 AC005344.1-201ENST00000613391 459 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC138649.5-201ENST00000637456 137 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.42□□□□□ -1.7
SMARCA1P28370 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
SMARCA1P28370 AC244517.1-201ENST00000606030 2086 ntBASIC4.42□□□□□ -1.7
SMARCA1P28370 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.42□□□□□ -1.7
SMARCA1P28370 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
SMARCA1P28370 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
SMARCA1P28370 Y_RNA.256-201ENST00000364594 104 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 SNORD6-201ENST00000365444 73 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
SMARCA1P28370 Y_RNA.409-201ENST00000383990 98 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 MIR19A-201ENST00000384878 82 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 RPL32P23-201ENST00000397237 405 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 RN7SKP156-201ENST00000410308 342 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.41□□□□□ -1.7
SMARCA1P28370 AC233728.2-201ENST00000425348 757 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 MTCO2P19-201ENST00000427513 598 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AC073464.1-201ENST00000429823 534 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC4.41□□□□□ -1.7
SMARCA1P28370 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
SMARCA1P28370 RAC1P7-201ENST00000445367 377 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.41□□□□□ -1.7
SMARCA1P28370 AL133162.1-201ENST00000463228 453 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 AC023598.1-201ENST00000472521 361 ntBASIC4.41□□□□□ -1.7
SMARCA1P28370 SUMO2P20-201ENST00000520803 283 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms