Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 RNA5SP126-201ENST00000365092 109 ntBASIC2.44□□□□□ -2.02
USF1P22415 PTP4A1P7-201ENST00000423476 514 ntBASIC2.44□□□□□ -2.02
USF1P22415 RPL39P40-201ENST00000445481 146 ntBASIC2.44□□□□□ -2.02
USF1P22415 Z96811.1-201ENST00000445880 108 ntBASIC2.44□□□□□ -2.02
USF1P22415 AC010099.1-201ENST00000455434 375 ntBASIC2.44□□□□□ -2.02
USF1P22415 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC2.44□□□□□ -2.02
USF1P22415 AC008427.1-201ENST00000503102 655 ntBASIC2.44□□□□□ -2.02
USF1P22415 AIG1P1-201ENST00000503376 148 ntBASIC2.44□□□□□ -2.02
USF1P22415 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC2.44□□□□□ -2.02
USF1P22415 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.44□□□□□ -2.02
USF1P22415 MTCYBP16-201ENST00000509187 1129 ntBASIC2.44□□□□□ -2.02
USF1P22415 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.44□□□□□ -2.02
USF1P22415 AC109464.2-201ENST00000510242 943 ntBASIC2.44□□□□□ -2.02
USF1P22415 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.44□□□□□ -2.02
USF1P22415 RN7SKP132-201ENST00000516001 208 ntBASIC2.44□□□□□ -2.02
USF1P22415 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
USF1P22415 CASP1P1-201ENST00000526345 212 ntBASIC2.44□□□□□ -2.02
USF1P22415 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
USF1P22415 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.44□□□□□ -2.02
USF1P22415 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC2.44□□□□□ -2.02
USF1P22415 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.44□□□□□ -2.02
USF1P22415 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.44□□□□□ -2.02
USF1P22415 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC2.44□□□□□ -2.02
USF1P22415 VN1R90P-201ENST00000595717 726 ntBASIC2.44□□□□□ -2.02
USF1P22415 AC079089.3-201ENST00000603094 673 ntBASIC2.44□□□□□ -2.02
USF1P22415 AC004853.1-201ENST00000604902 698 ntBASIC2.44□□□□□ -2.02
USF1P22415 AC069545.1-201ENST00000605671 358 ntBASIC2.44□□□□□ -2.02
USF1P22415 RPL23AP88-201ENST00000605759 454 ntBASIC2.44□□□□□ -2.02
USF1P22415 AC116312.1-201ENST00000606841 314 ntBASIC2.44□□□□□ -2.02
USF1P22415 AL627309.6-201ENST00000606857 840 ntBASIC2.44□□□□□ -2.02
USF1P22415 DUXAP10-204ENST00000612052 616 ntBASIC2.44□□□□□ -2.02
USF1P22415 AC107871.2-201ENST00000612894 502 ntBASIC2.44□□□□□ -2.02
USF1P22415 AC025588.4-201ENST00000615802 908 ntBASIC2.44□□□□□ -2.02
USF1P22415 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
USF1P22415 AC084824.4-201ENST00000620106 731 ntBASIC2.44□□□□□ -2.02
USF1P22415 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
USF1P22415 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
USF1P22415 CDR1-202ENST00000625883 1485 ntBASIC2.44□□□□□ -2.02
USF1P22415 Z82195.2-201ENST00000612348 18351 ntBASIC2.44□□□□□ -2.02
USF1P22415 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.44□□□□□ -2.02
USF1P22415 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.44□□□□□ -2.02
USF1P22415 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.44□□□□□ -2.02
USF1P22415 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.43□□□□□ -2.02
USF1P22415 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
USF1P22415 AC073325.2-201ENST00000339545 159 ntBASIC2.43□□□□□ -2.02
USF1P22415 RNU2-42P-201ENST00000410697 113 ntBASIC2.43□□□□□ -2.02
USF1P22415 CCDC58P2-201ENST00000417131 366 ntBASIC2.43□□□□□ -2.02
USF1P22415 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC2.43□□□□□ -2.02
USF1P22415 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.43□□□□□ -2.02
USF1P22415 NUP35P1-201ENST00000422734 947 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC019097.1-201ENST00000424783 735 ntBASIC2.43□□□□□ -2.02
USF1P22415 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.43□□□□□ -2.02
USF1P22415 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.43□□□□□ -2.02
USF1P22415 AC092573.2-201ENST00000434546 243 ntBASIC2.43□□□□□ -2.02
USF1P22415 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.43□□□□□ -2.02
USF1P22415 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.43□□□□□ -2.02
USF1P22415 RPS27AP9-201ENST00000477681 438 ntBASIC2.43□□□□□ -2.02
USF1P22415 RPL30P5-201ENST00000494923 336 ntBASIC2.43□□□□□ -2.02
USF1P22415 RPL21P131-201ENST00000497298 483 ntBASIC2.43□□□□□ -2.02
USF1P22415 TMEM251P1-201ENST00000503717 318 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC114981.1-201ENST00000503897 678 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC017037.2-201ENST00000513850 890 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC112198.4-201ENST00000515450 351 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC022861.1-201ENST00000522981 663 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC2.43□□□□□ -2.02
USF1P22415 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
USF1P22415 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.43□□□□□ -2.02
USF1P22415 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.43□□□□□ -2.02
USF1P22415 HMGB1P6-201ENST00000569046 646 ntBASIC2.43□□□□□ -2.02
USF1P22415 MIR3912-201ENST00000577566 105 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC024153.1-201ENST00000603103 365 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC007619.2-201ENST00000605743 379 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC069234.5-201ENST00000611056 416 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC2.43□□□□□ -2.02
USF1P22415 AC090772.4-201ENST00000623599 362 ntBASIC2.43□□□□□ -2.02
USF1P22415 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.43□□□□□ -2.02
USF1P22415 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
USF1P22415 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.43□□□□□ -2.02
USF1P22415 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.43□□□□□ -2.02
USF1P22415 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
USF1P22415 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC2.42□□□□□ -2.02
USF1P22415 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.42□□□□□ -2.02
USF1P22415 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
USF1P22415 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
USF1P22415 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.42□□□□□ -2.02
USF1P22415 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
USF1P22415 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
USF1P22415 AC062016.1-201ENST00000355719 319 ntBASIC2.42□□□□□ -2.02
USF1P22415 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
USF1P22415 RNU1-109P-201ENST00000383960 147 ntBASIC2.42□□□□□ -2.02
USF1P22415 SNORA18.3-201ENST00000384122 132 ntBASIC2.42□□□□□ -2.02
USF1P22415 Y_RNA.578-201ENST00000390903 88 ntBASIC2.42□□□□□ -2.02
USF1P22415 AL445529.1-201ENST00000398713 389 ntBASIC2.42□□□□□ -2.02
USF1P22415 RPS4XP8-201ENST00000402039 771 ntBASIC2.42□□□□□ -2.02
USF1P22415 UQCRFS1P3-201ENST00000407697 385 ntBASIC2.42□□□□□ -2.02
USF1P22415 AL096701.2-201ENST00000416920 238 ntBASIC2.42□□□□□ -2.02
USF1P22415 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.42□□□□□ -2.02
USF1P22415 MTND4P3-201ENST00000417829 541 ntBASIC2.42□□□□□ -2.02
USF1P22415 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.42□□□□□ -2.02
USF1P22415 AC007435.1-201ENST00000421086 415 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms