Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RNA5SP181-201ENST00000410246 98 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC1.61□□□□□ -2.15
COL6A3P12111 FABP5P3-201ENST00000437960 408 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.61□□□□□ -2.15
COL6A3P12111 AC078918.1-201ENST00000498515 228 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
COL6A3P12111 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.61□□□□□ -2.15
COL6A3P12111 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
COL6A3P12111 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC1.61□□□□□ -2.15
COL6A3P12111 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC1.61□□□□□ -2.15
COL6A3P12111 AC079203.1-201ENST00000487972 404 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC1.61□□□□□ -2.15
COL6A3P12111 ATG10-AS1-201ENST00000504846 648 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.61□□□□□ -2.15
COL6A3P12111 AC069528.1-202ENST00000482888 637 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC1.61□□□□□ -2.15
COL6A3P12111 FO624990.1-201ENST00000636373 85 ntBASIC1.61□□□□□ -2.15
COL6A3P12111 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.61□□□□□ -2.15
COL6A3P12111 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC1.61□□□□□ -2.15
COL6A3P12111 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.6□□□□□ -2.15
COL6A3P12111 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
COL6A3P12111 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.6□□□□□ -2.15
COL6A3P12111 RNA5SP338-201ENST00000410495 85 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 RNU6-717P-201ENST00000459076 104 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 AC104435.1-201ENST00000483483 166 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 RNU6-826P-201ENST00000516827 104 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 AC060766.3-201ENST00000591442 263 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 AC013244.3-201ENST00000605614 388 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 AL592494.3-201ENST00000609485 464 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 SNORA50A-202ENST00000629536 136 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
COL6A3P12111 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC1.6□□□□□ -2.15
COL6A3P12111 Y_RNA.60-201ENST00000362831 98 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.6□□□□□ -2.15
COL6A3P12111 ARL5AP3-201ENST00000439327 386 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 SNX5P1-201ENST00000505757 1041 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 ZNF734P-201ENST00000419494 1534 ntBASIC1.6□□□□□ -2.15
COL6A3P12111 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
COL6A3P12111 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
COL6A3P12111 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC1.59□□□□□ -2.15
COL6A3P12111 CYCSP48-201ENST00000417124 323 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 RPS6P15-201ENST00000431996 751 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 PSPHP1-201ENST00000450062 261 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.59□□□□□ -2.15
COL6A3P12111 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
COL6A3P12111 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.59□□□□□ -2.15
COL6A3P12111 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.59□□□□□ -2.15
COL6A3P12111 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
COL6A3P12111 MTCO3P30-201ENST00000426425 670 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 AC025033.1-201ENST00000463883 194 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 ARL2BPP4-201ENST00000506854 471 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 TBCAP3-201ENST00000512475 312 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 RNA5SP330-201ENST00000517096 96 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.59□□□□□ -2.15
COL6A3P12111 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.59□□□□□ -2.15
COL6A3P12111 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.59□□□□□ -2.15
COL6A3P12111 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.59□□□□□ -2.15
COL6A3P12111 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.59□□□□□ -2.15
COL6A3P12111 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.59□□□□□ -2.15
COL6A3P12111 AC010329.2-201ENST00000595195 2737 ntBASIC1.59□□□□□ -2.16
COL6A3P12111 MTND4P1-201ENST00000457501 1466 ntBASIC1.59□□□□□ -2.16
COL6A3P12111 RNU6-666P-201ENST00000363499 107 ntBASIC1.59□□□□□ -2.16
COL6A3P12111 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC1.59□□□□□ -2.16
COL6A3P12111 CYP3A137P-201ENST00000562436 69 ntBASIC1.59□□□□□ -2.16
COL6A3P12111 MIR4448-201ENST00000584360 86 ntBASIC1.59□□□□□ -2.16
COL6A3P12111 AC087588.2-201ENST00000617667 426 ntBASIC1.59□□□□□ -2.16
COL6A3P12111 ZNF209P-201ENST00000593450 2304 ntBASIC1.59□□□□□ -2.16
COL6A3P12111 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL6A3P12111 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL6A3P12111 Y_RNA.518-201ENST00000384552 113 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 USP9YP27-201ENST00000418455 438 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 AC005517.2-201ENST00000424673 553 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 AL590664.1-201ENST00000448065 339 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.58□□□□□ -2.16
COL6A3P12111 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.58□□□□□ -2.16
COL6A3P12111 RPS3AP23-202ENST00000574601 686 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 MKKS-204ENST00000639674 192 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC1.58□□□□□ -2.16
COL6A3P12111 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC1.58□□□□□ -2.16
COL6A3P12111 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.58□□□□□ -2.16
COL6A3P12111 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
COL6A3P12111 MIR222-201ENST00000384992 110 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.58□□□□□ -2.16
COL6A3P12111 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.58□□□□□ -2.16
COL6A3P12111 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC1.58□□□□□ -2.16
COL6A3P12111 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.58□□□□□ -2.16
COL6A3P12111 LINC02472-201ENST00000512268 575 ntTSL 2 BASIC1.58□□□□□ -2.16
COL6A3P12111 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.58□□□□□ -2.16
COL6A3P12111 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
COL6A3P12111 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.58□□□□□ -2.16
COL6A3P12111 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
COL6A3P12111 CUL4AP1-201ENST00000514750 1863 ntBASIC1.58□□□□□ -2.16
COL6A3P12111 RNU1-133P-201ENST00000364867 167 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC1.57□□□□□ -2.16
COL6A3P12111 AC027673.1-201ENST00000456245 405 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 HMGB3P15-201ENST00000507326 574 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 AC098799.2-201ENST00000509466 868 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 AC008837.2-201ENST00000513076 418 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms