Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.6□□□□□ -1.67
HMGB1P09429 AC004069.2-201ENST00000505438 1114 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 RNU6-201P-201ENST00000517100 61 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 RNU6-232P-201ENST00000517144 64 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.6□□□□□ -1.67
HMGB1P09429 AC022616.6-201ENST00000520479 119 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC4.6□□□□□ -1.67
HMGB1P09429 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.6□□□□□ -1.67
HMGB1P09429 ZNF519P3-201ENST00000557158 1032 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 AC090877.1-201ENST00000561418 344 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 AL360157.1-201ENST00000565962 87 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC4.6□□□□□ -1.67
HMGB1P09429 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.6□□□□□ -1.67
HMGB1P09429 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.6□□□□□ -1.67
HMGB1P09429 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.6□□□□□ -1.67
HMGB1P09429 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.6□□□□□ -1.67
HMGB1P09429 AL035413.2-201ENST00000604801 525 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 AC004805.2-201ENST00000605382 482 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 AC127502.3-201ENST00000636170 1206 ntBASIC4.6□□□□□ -1.67
HMGB1P09429 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
HMGB1P09429 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
HMGB1P09429 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.59□□□□□ -1.67
HMGB1P09429 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC4.59□□□□□ -1.67
HMGB1P09429 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
HMGB1P09429 SNORA70.2-201ENST00000364506 135 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 RNA5SP97-201ENST00000365006 84 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 RNU1-13P-201ENST00000384499 162 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 RNU2-62P-201ENST00000410868 191 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 USP9YP13-201ENST00000417797 480 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 RPL7P37-201ENST00000425095 738 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AC002075.2-201ENST00000425207 252 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AL353777.1-201ENST00000425552 326 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AL365496.1-201ENST00000426885 215 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.59□□□□□ -1.67
HMGB1P09429 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 HSFY6P-201ENST00000445573 403 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 HMGB3P8-201ENST00000449709 577 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.59□□□□□ -1.67
HMGB1P09429 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.59□□□□□ -1.67
HMGB1P09429 MRPS17P3-201ENST00000465453 385 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 BZW1P2-201ENST00000473537 826 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HMGB1P09429 RPF2P2-201ENST00000504693 896 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AC010342.1-201ENST00000514047 877 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 RNA5SP471-201ENST00000516971 106 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 RNU6-1231P-201ENST00000517185 103 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HMGB1P09429 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC4.59□□□□□ -1.67
HMGB1P09429 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
HMGB1P09429 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
HMGB1P09429 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.59□□□□□ -1.67
HMGB1P09429 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC4.59□□□□□ -1.67
HMGB1P09429 AC136624.4-201ENST00000573044 370 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AL355816.2-201ENST00000610049 647 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AC008498.1-201ENST00000613012 531 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AC027807.2-201ENST00000616099 408 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AC006338.1-201ENST00000618453 749 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 CR392039.5-201ENST00000623201 510 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 AP003399.1-201ENST00000637534 361 ntBASIC4.59□□□□□ -1.67
HMGB1P09429 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
HMGB1P09429 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
HMGB1P09429 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
HMGB1P09429 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.68
HMGB1P09429 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.59□□□□□ -1.68
HMGB1P09429 AC008669.1-201ENST00000565823 2178 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AC007496.3-201ENST00000624987 3443 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 TNPO1P3-201ENST00000436471 2662 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 RNA5SP443-201ENST00000363083 132 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AC104651.1-201ENST00000427559 735 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC4.58□□□□□ -1.68
HMGB1P09429 SNRPEP9-201ENST00000436794 238 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.58□□□□□ -1.68
HMGB1P09429 PDSS1P2-201ENST00000449397 678 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC4.58□□□□□ -1.68
HMGB1P09429 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC4.58□□□□□ -1.68
HMGB1P09429 AL590365.1-201ENST00000450788 243 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 SSXP1-201ENST00000453640 473 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC4.58□□□□□ -1.68
HMGB1P09429 AC087588.1-201ENST00000462203 316 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AC114786.4-201ENST00000508771 728 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 MRPS33P3-201ENST00000513456 322 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 RNA5SP164-201ENST00000516533 110 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 RNU6-759P-201ENST00000516740 103 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.58□□□□□ -1.68
HMGB1P09429 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.58□□□□□ -1.68
HMGB1P09429 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC4.58□□□□□ -1.68
HMGB1P09429 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.58□□□□□ -1.68
HMGB1P09429 AC020895.1-201ENST00000595362 272 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AC098826.3-201ENST00000603823 466 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AP000860.1-201ENST00000605250 559 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HMGB1P09429 MIR7844-201ENST00000616161 122 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 MIR6500-201ENST00000622700 86 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 AF246928.1-201ENST00000623768 87 ntBASIC4.58□□□□□ -1.68
HMGB1P09429 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC4.58□□□□□ -1.68
HMGB1P09429 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HMGB1P09429 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
HMGB1P09429 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
HMGB1P09429 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 126.4 ms