Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNU6-358P-201ENST00000516564 75 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 RNU6-445P-201ENST00000516949 107 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.35□□□□□ -1.87
LMX1BO60663 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.35□□□□□ -1.87
LMX1BO60663 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.35□□□□□ -1.87
LMX1BO60663 AC090616.5-202ENST00000582111 297 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.35□□□□□ -1.87
LMX1BO60663 NRBF2P1-201ENST00000587407 859 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 UBE2L4-201ENST00000587688 464 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AC245014.2-201ENST00000603689 287 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 AC246785.4-201ENST00000605374 287 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AC113194.1-201ENST00000606037 500 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AC008536.2-201ENST00000607284 349 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AL355472.4-201ENST00000610233 626 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.35□□□□□ -1.87
LMX1BO60663 AL391261.4-201ENST00000616012 481 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AC004825.2-201ENST00000616634 455 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
LMX1BO60663 AC104985.2-201ENST00000620598 500 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 AC012150.2-201ENST00000621300 544 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AL158801.5-201ENST00000623123 465 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.35□□□□□ -1.87
LMX1BO60663 MIR1321-201ENST00000637766 79 ntBASIC3.35□□□□□ -1.87
LMX1BO60663 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.35□□□□□ -1.87
LMX1BO60663 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
LMX1BO60663 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.34□□□□□ -1.87
LMX1BO60663 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
LMX1BO60663 AC092447.10-201ENST00000620607 1652 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.34□□□□□ -1.87
LMX1BO60663 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
LMX1BO60663 Y_RNA.38-201ENST00000362617 102 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 RNU6-853P-201ENST00000364306 107 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
LMX1BO60663 RNU6-483P-201ENST00000384088 108 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 MIR3074-201ENST00000384885 81 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 MT-TL1-201ENST00000386347 75 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 HLFP1-201ENST00000402375 499 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
LMX1BO60663 HSPE1P8-201ENST00000406997 288 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC127526.1-201ENST00000417526 366 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 RPL31P45-201ENST00000419532 356 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC092832.1-201ENST00000422934 400 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 MTCO1P20-201ENST00000425366 358 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC105402.2-201ENST00000438503 358 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 RPL22P17-201ENST00000438729 315 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC3.34□□□□□ -1.87
LMX1BO60663 AL049734.2-201ENST00000441066 616 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.34□□□□□ -1.87
LMX1BO60663 MTND5P20-201ENST00000448677 143 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC239809.1-201ENST00000450470 217 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC084198.1-201ENST00000477747 402 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AP001025.2-201ENST00000490908 477 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 RAC1P2-201ENST00000511164 579 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC005798.1-201ENST00000513715 387 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 RNU6-507P-201ENST00000516045 100 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 Y_RNA.693-201ENST00000516641 110 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC107934.1-201ENST00000522215 217 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AP001646.1-201ENST00000527936 915 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC135001.1-201ENST00000544546 283 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.34□□□□□ -1.87
LMX1BO60663 SRGNP1-201ENST00000603392 451 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC025946.2-201ENST00000603398 234 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 RPL23AP92-201ENST00000603609 255 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AL161756.2-201ENST00000604597 246 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC055876.5-201ENST00000605667 259 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 BX664608.1-201ENST00000610519 487 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC3.34□□□□□ -1.87
LMX1BO60663 AC009318.4-201ENST00000620496 486 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC091953.2-201ENST00000623979 160 ntBASIC3.34□□□□□ -1.87
LMX1BO60663 AC097714.1-201ENST00000511272 1647 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC3.33□□□□□ -1.88
LMX1BO60663 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
LMX1BO60663 AC011978.2-201ENST00000569835 2054 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
LMX1BO60663 RNU5E-1-201ENST00000362477 120 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 SNORA73.2-201ENST00000364946 201 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 MIR483-201ENST00000385070 76 ntBASIC3.33□□□□□ -1.88
LMX1BO60663 RPL23AP32-201ENST00000395315 459 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms