Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AL022578.1-201ENST00000439330 1433 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 RNU7-136P-201ENST00000458819 69 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 RPS23P3-201ENST00000470993 430 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 MTND2P32-201ENST00000521584 1038 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 OR5AK1P-201ENST00000524837 922 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 HPRT1P3-201ENST00000539521 576 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC079600.2-201ENST00000550076 130 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC090695.1-201ENST00000561269 1222 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AC012119.1-201ENST00000603184 222 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AL033523.1-201ENST00000605153 153 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 VIS1.1-201ENST00000610517 203 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 AL079343.1-201ENST00000572358 1771 ntBASIC3.23□□□□□ -1.89
VPS54Q9P1Q0 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 OR4G11P-202ENST00000642116 1414 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 RNU6-1155P-201ENST00000363554 107 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 RNU6-621P-201ENST00000364752 109 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 SNORA72.3-201ENST00000365074 132 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 RNU6-952P-201ENST00000391164 108 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 HMGB1P17-201ENST00000403495 628 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 MIR1284-201ENST00000408337 120 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 Z92545.1-201ENST00000411782 234 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC109780.2-201ENST00000413467 845 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 TPMTP2-201ENST00000414372 726 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 NDUFB4P5-201ENST00000415445 361 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 SDCBPP3-201ENST00000419629 891 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 EZH2P1-201ENST00000431167 291 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC084290.1-201ENST00000434995 374 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC097493.1-201ENST00000463958 372 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC091951.3-201ENST00000504093 246 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 CBX3P3-201ENST00000508108 532 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 POU5F1P7-201ENST00000508759 541 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 DEFB131D-201ENST00000526803 184 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 CR383656.7-201ENST00000548164 174 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 NBEAP1-201ENST00000554452 979 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AGGF1P5-201ENST00000567900 919 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AL022099.1-201ENST00000604551 712 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AL031176.1-201ENST00000604554 466 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AL390208.1-201ENST00000605885 644 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC006270.3-201ENST00000605967 1036 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 AC093010.3-201ENST00000570269 15214 ntBASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
VPS54Q9P1Q0 SNORA51.4-201ENST00000364993 124 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC096664.2-201ENST00000411843 406 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 ELOCP9-201ENST00000418624 239 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AL137014.1-201ENST00000420490 1226 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 HSPE1P1-201ENST00000421494 318 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 RPS25P9-201ENST00000435591 252 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC093677.1-201ENST00000514414 678 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 RNU6-150P-201ENST00000516237 95 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 SNORD59.2-201ENST00000516873 68 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 MTND4P33-201ENST00000556706 766 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 MED28P6-201ENST00000558776 231 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 OR4K8P-201ENST00000578842 1048 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 COX6CP3-201ENST00000580869 223 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 ZNF861P-201ENST00000588126 639 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC009220.3-201ENST00000604318 586 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC106900.2-201ENST00000604994 317 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC005046.1-201ENST00000608515 625 ntBASIC3.21□□□□□ -1.9
VPS54Q9P1Q0 AC106028.5-201ENST00000610332 395 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms