Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 MIR331-201ENST00000362302 94 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 RNU6-1160P-201ENST00000384546 104 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 RPL5P18-201ENST00000406671 891 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 SNORA11.1-201ENST00000408133 129 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC074085.1-201ENST00000413598 418 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 RPL7L1P10-201ENST00000427790 463 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 CALM2P2-201ENST00000428512 440 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC010655.1-201ENST00000449336 292 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 VN1R17P-201ENST00000472048 1090 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 HMGB3P15-201ENST00000507326 574 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 RPL39P5-202ENST00000512505 151 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC103783.1-201ENST00000520506 373 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AP001804.3-201ENST00000525146 880 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 DEFB108D-201ENST00000527787 222 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AP000889.2-201ENST00000532684 490 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 ELOCP31-201ENST00000540463 467 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC007151.1-201ENST00000572774 483 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC024619.4-201ENST00000580924 316 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 BNIP3P25-201ENST00000596023 559 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 APOOP1-201ENST00000604695 592 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 uc_338.13-201ENST00000618243 179 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC112200.1-201ENST00000625015 234 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 AC103710.2-202ENST00000641454 2853 ntBASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC87Q9NVE4 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.49
CCDC87Q9NVE4 AC093849.1-201ENST00000563631 2209 ntBASIC5.71□□□□□ -1.49
CCDC87Q9NVE4 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.49
CCDC87Q9NVE4 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC87Q9NVE4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 MIR372-201ENST00000362225 67 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNU6-1287P-201ENST00000362914 107 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 SNORA63C-201ENST00000364578 129 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNU6-61P-201ENST00000365528 109 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 MDM4-202ENST00000367180 547 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 UBBP2-201ENST00000376781 231 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNU6-474P-201ENST00000384243 107 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNU6-1060P-201ENST00000384664 107 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNU6-821P-201ENST00000390995 107 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNY4P36-201ENST00000391116 96 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNU11-4P-201ENST00000391149 133 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 SNORA75.4-201ENST00000391278 119 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 MTCYBP4-201ENST00000401524 249 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 SNORA11F-201ENST00000408237 128 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 MIR548K-201ENST00000408406 116 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 EIF4A1P3-201ENST00000411521 244 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL590609.2-201ENST00000421430 368 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RPS3AP52-201ENST00000435639 297 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 RNU7-152P-201ENST00000458982 64 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC083904.1-201ENST00000487828 231 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 MYL12AP1-201ENST00000518490 515 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 CR383656.7-201ENST00000548164 174 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL118558.2-201ENST00000556294 238 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC012182.1-201ENST00000570133 895 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL031176.1-201ENST00000604554 466 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC080078.3-201ENST00000605407 463 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AL080274.1-201ENST00000605565 220 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 AC008121.3-201ENST00000618726 433 ntBASIC5.71□□□□□ -1.5
CCDC87Q9NVE4 MIR6891-201ENST00000618788 93 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms