Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AC117529.2-201ENST00000512159 2068 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 AL022578.1-201ENST00000439330 1433 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 DCAF13P1-201ENST00000495256 1330 ntBASIC3.94□□□□□ -1.78
EBF3Q9H4W6 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
EBF3Q9H4W6 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 RNU6-921P-201ENST00000384361 107 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 MIR3074-201ENST00000384885 81 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 HMGB1P17-201ENST00000403495 628 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AL356776.1-201ENST00000406574 447 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC008850.1-201ENST00000427546 362 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 BX890604.2-201ENST00000427883 474 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 RPL23AP83-201ENST00000434984 473 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 RPL37P21-201ENST00000435890 276 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC104850.1-201ENST00000435940 476 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 SNRPFP4-201ENST00000456366 242 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC087312.1-201ENST00000471411 480 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC010301.1-201ENST00000473936 355 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 S100A11P1-201ENST00000477525 312 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC018710.1-201ENST00000506509 158 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 MTCO3P9-201ENST00000506989 781 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC105914.1-201ENST00000511798 226 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AP005639.2-201ENST00000527592 928 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 MIR3922-201ENST00000585192 84 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC005261.5-201ENST00000596280 355 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC112191.3-201ENST00000604371 277 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC007179.3-201ENST00000604976 235 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AC055876.5-201ENST00000605667 259 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AL590282.1-201ENST00000610379 1136 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 AP003122.6-201ENST00000623831 495 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 CPNE8-202ENST00000360449 1757 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 TNPO1P3-201ENST00000436471 2662 ntBASIC3.93□□□□□ -1.78
EBF3Q9H4W6 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.93□□□□□ -1.78
EBF3Q9H4W6 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 RNU4-73P-201ENST00000363164 141 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 RN7SKP44-201ENST00000363602 316 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.529-201ENST00000384586 119 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 MIR199A2-201ENST00000385289 110 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 U8.14-201ENST00000390843 143 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 SNRPEP2-201ENST00000397592 279 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AL356057.2-201ENST00000403318 432 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 RNU4-55P-201ENST00000410731 137 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 BX295541.1-201ENST00000417774 250 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC009961.2-201ENST00000435771 251 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 YWHAZP8-201ENST00000436935 731 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 CYCSP43-201ENST00000438233 310 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 RPS26P56-201ENST00000444468 240 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AL645939.1-201ENST00000453429 797 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 MTCO3P2-201ENST00000457365 171 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC106707.2-201ENST00000484182 374 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC106872.2-201ENST00000494303 480 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC021678.1-201ENST00000505195 936 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC093809.1-201ENST00000509155 340 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC026412.2-201ENST00000512270 1075 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 RNA5SP164-201ENST00000516533 110 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 Y_RNA.701-201ENST00000516812 110 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 CENPUP1-201ENST00000526649 1202 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 MTND1P35-201ENST00000526739 508 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC022878.1-201ENST00000530684 149 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC068587.4-201ENST00000533893 186 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC099489.2-201ENST00000574976 260 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC005498.1-201ENST00000592125 465 ntBASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.92□□□□□ -1.78
EBF3Q9H4W6 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms