Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC099677.1-201ENST00000420575 175 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC006366.1-201ENST00000422002 759 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AL158071.1-201ENST00000430315 461 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 UBE2V1P13-201ENST00000436983 439 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 FTH1P1-201ENST00000437933 532 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 RAC1P7-201ENST00000445367 377 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 MTND4P2-201ENST00000507767 1203 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 HMGN1P11-201ENST00000508668 303 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 SNORA70.18-201ENST00000516696 98 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 RNU6-798P-201ENST00000516912 103 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AP003181.2-201ENST00000528941 181 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC109635.4-202ENST00000531666 412 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC125611.2-201ENST00000551907 647 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 MTCYBP33-201ENST00000575007 1130 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 BNIP3P33-201ENST00000598912 569 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AP001429.1-201ENST00000602568 530 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC112191.3-201ENST00000604371 277 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AL022099.1-201ENST00000604551 712 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC006077.1-201ENST00000604746 343 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 RNVU1-4-201ENST00000612985 164 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC010678.1-201ENST00000614118 713 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC009509.4-201ENST00000619202 509 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 AC011460.1-201ENST00000636268 1834 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
NKX3-1Q99801 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
NKX3-1Q99801 ZNF826P-207ENST00000622273 1910 ntBASIC3.11□□□□□ -1.91
NKX3-1Q99801 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.11□□□□□ -1.91
NKX3-1Q99801 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 MIR30E-201ENST00000362104 92 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 RNU6-600P-201ENST00000362524 99 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 Y_RNA.201-201ENST00000364052 96 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 RNU6-1078P-201ENST00000364522 103 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 RNU4-75P-201ENST00000364621 146 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 SNORA75-201ENST00000384158 137 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 DEFB108C-201ENST00000400154 252 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 SNORA3.3-201ENST00000408712 125 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC017079.2-201ENST00000416102 485 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 MTCO3P12-201ENST00000416718 547 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 MTCO1P39-201ENST00000426148 480 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC018644.1-201ENST00000429934 551 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 ARF4P2-201ENST00000430209 526 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 RPL22P17-201ENST00000438729 315 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 TPT1P14-201ENST00000448018 505 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 MTCO2P18-201ENST00000457151 658 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AP1S2P1-201ENST00000457344 379 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC078785.3-201ENST00000476607 425 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 RAP1BP2-201ENST00000478270 544 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 ACTR3P3-201ENST00000480448 893 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AP002812.1-201ENST00000495378 474 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC112204.1-201ENST00000502591 103 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 CBX3P3-201ENST00000508108 532 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC110768.1-201ENST00000509222 400 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC004062.1-201ENST00000509926 645 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC079140.3-201ENST00000511111 550 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC022878.1-201ENST00000530684 149 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 OR4T1P-201ENST00000554933 911 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AL157394.1-201ENST00000562983 1224 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 MIR3158-1-201ENST00000583596 81 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC009977.1-201ENST00000586015 570 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC064872.1-201ENST00000604823 1072 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms