Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU4-65P-201ENST00000410473 140 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 RNU6-1068P-201ENST00000410958 103 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 RNU6-1148P-201ENST00000410992 104 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC140479.3-201ENST00000418944 1126 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL162591.2-201ENST00000449634 317 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC079168.2-201ENST00000453977 416 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC110792.1-201ENST00000491826 472 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC020893.1-201ENST00000502452 580 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 MLLT10P2-201ENST00000506434 249 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 KLHL2P1-201ENST00000508691 521 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL133153.1-201ENST00000557756 303 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 MIR4284-201ENST00000578924 81 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC243960.4-201ENST00000600532 288 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL139395.1-201ENST00000603662 160 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC113139.1-201ENST00000605049 239 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AL450472.3-201ENST00000615578 367 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC006971.1-201ENST00000407916 4486 ntBASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.48□□□□□ -1.69
CLIP3Q96DZ5 AC108751.5-201ENST00000492880 1336 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC139713.2-214ENST00000642059 1811 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RNU6-223P-201ENST00000362830 107 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 SNORD113.2-201ENST00000364166 89 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 SNORA69-201ENST00000383895 132 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RNU6-278P-201ENST00000390945 109 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RNU6-1158P-201ENST00000391167 107 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RPL23AP32-201ENST00000395315 459 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RPL32P23-201ENST00000397237 405 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AL354719.1-201ENST00000406535 843 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 MIR1183-201ENST00000408856 89 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 SNRPFP1-201ENST00000414761 252 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RAC1P3-201ENST00000416129 580 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 MTATP6P18-201ENST00000417994 673 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 EIF4EP1-201ENST00000422311 642 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RGS17P1-201ENST00000423358 553 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RPL23AP38-201ENST00000423801 469 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 MTCO1P39-201ENST00000426148 480 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC079780.1-201ENST00000428259 207 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AL606489.2-201ENST00000433886 234 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC004866.2-201ENST00000438285 481 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RPL21P89-201ENST00000444021 467 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AL359073.1-201ENST00000448036 403 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RPL31P13-201ENST00000484151 370 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC135721.1-201ENST00000497954 479 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 FTH1P21-201ENST00000512179 511 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 DEFB108D-201ENST00000527787 222 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC099489.2-201ENST00000574976 260 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC069061.3-201ENST00000582254 823 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC007687.1-201ENST00000602704 304 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC008638.3-201ENST00000603341 463 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC025946.2-201ENST00000603398 234 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AL034351.1-201ENST00000605288 668 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC091979.2-201ENST00000607514 214 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AL355802.3-201ENST00000607571 545 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AL161734.1-201ENST00000609720 557 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC245517.5-201ENST00000611529 162 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AL360181.4-201ENST00000621752 134 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 RMST_7.1-201ENST00000621935 268 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC243312.2-201ENST00000623340 601 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 AC112200.1-201ENST00000625015 234 ntBASIC4.47□□□□□ -1.69
CLIP3Q96DZ5 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 140.7 ms