Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
USHBP1Q8N6Y0 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
USHBP1Q8N6Y0 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.29□□□□□ -1.56
USHBP1Q8N6Y0 RIOK3P1-201ENST00000418778 1528 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 Y_RNA.255-201ENST00000364581 97 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 DSTNP4-201ENST00000399472 474 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AL356421.1-201ENST00000403255 413 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AL136116.1-201ENST00000403591 381 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AL591416.1-201ENST00000404015 867 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 RPL31P52-201ENST00000407532 367 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 GSTM3P2-201ENST00000412746 530 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC007283.2-201ENST00000424739 197 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC024082.2-201ENST00000434771 238 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AL049734.2-201ENST00000441066 616 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC079781.2-201ENST00000446424 169 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 TRBV26-201ENST00000456572 344 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 Y_RNA.632-201ENST00000459189 102 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 RPL7P49-201ENST00000471402 708 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 RPL23AP65-201ENST00000475608 468 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 BTF3P12-201ENST00000519620 469 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 IGLV3-26-201ENST00000520756 302 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC098848.2-201ENST00000588023 330 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC008739.3-201ENST00000603262 127 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC010591.1-201ENST00000603941 649 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AL355472.4-201ENST00000610233 626 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 C2orf27A-204ENST00000623058 969 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC090617.10-201ENST00000624308 134 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC009093.8-201ENST00000641769 292 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC006020.1-201ENST00000420179 1854 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 AC106871.1-201ENST00000568324 3102 ntBASIC5.28□□□□□ -1.56
USHBP1Q8N6Y0 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 LINC01355-201ENST00000566551 5444 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 RNU1-15P-201ENST00000353977 144 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 IARS-201ENST00000375627 697 ntTSL 3 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 SNORA5A-201ENST00000384111 134 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.474-201ENST00000384341 102 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 MIR92A2-201ENST00000385299 75 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 MIR1271-201ENST00000408537 86 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 SNORA57.3-201ENST00000411095 141 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 RPS7P15-201ENST00000415804 584 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC137499.1-201ENST00000427602 88 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 RPL23AP30-201ENST00000432419 501 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 CACYBPP2-201ENST00000453625 678 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC078785.3-201ENST00000476607 425 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 RPL23AP41-201ENST00000484754 458 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 TXNP6-201ENST00000510190 310 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 RNU1-95P-201ENST00000516357 160 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 RNU1-128P-201ENST00000516704 160 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-1220P-201ENST00000517126 108 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 PSMA2P1-201ENST00000526365 646 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC091516.1-201ENST00000549191 703 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 OR4T1P-201ENST00000554933 911 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC020661.2-201ENST00000560114 134 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 AC104237.2-201ENST00000612456 443 ntBASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
USHBP1Q8N6Y0 OR4G1P-203ENST00000641984 1631 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 XPOTP1-201ENST00000443317 2398 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 RNU6-28P-201ENST00000362378 107 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.315-201ENST00000365117 102 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 MIR606-201ENST00000384851 96 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 MIR1-2-201ENST00000384961 85 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 RPS23P10-201ENST00000416185 486 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC096632.1-201ENST00000427395 310 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 BRK1P2-201ENST00000442875 223 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 DDX3P2-201ENST00000446138 111 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC005297.2-201ENST00000450430 606 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AL354710.1-201ENST00000453641 246 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AL356010.1-201ENST00000456364 102 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 RPL7P42-201ENST00000481005 679 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC233702.1-201ENST00000482905 502 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 EIF4EP3-201ENST00000498782 656 ntBASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC5.26□□□□□ -1.57
USHBP1Q8N6Y0 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms