Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
USP54Q70EL1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
USP54Q70EL1 TAS2R15P-201ENST00000390674 928 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
USP54Q70EL1 RPL21P75-201ENST00000396599 483 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 RPL21P28-201ENST00000401418 483 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AL592114.1-201ENST00000403842 483 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC244098.2-201ENST00000422068 99 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AL645568.3-201ENST00000433683 316 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 BUD31P2-201ENST00000449374 300 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.25□□□□□ -2.05
USP54Q70EL1 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.25□□□□□ -2.05
USP54Q70EL1 AC011979.1-201ENST00000472300 483 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 RPL21P93-201ENST00000480465 489 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC233702.1-201ENST00000482905 502 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC093591.1-201ENST00000491435 481 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 RPL21P16-201ENST00000495531 483 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 MTCYBP17-201ENST00000503579 789 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 RNU4-18P-201ENST00000516751 149 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC2.25□□□□□ -2.05
USP54Q70EL1 MIR4448-201ENST00000584360 86 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.25□□□□□ -2.05
USP54Q70EL1 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.25□□□□□ -2.05
USP54Q70EL1 MIR8081-201ENST00000611533 95 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 uc_338.5-201ENST00000611839 155 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC090617.7-201ENST00000623952 126 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC015726.3-201ENST00000624501 418 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.25□□□□□ -2.05
USP54Q70EL1 SNORA16.1-201ENST00000364597 132 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 DNAJC19P6-201ENST00000401853 280 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 TRIM60P3Y-201ENST00000432201 673 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 TRIM60P18-201ENST00000441518 828 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC2.25□□□□□ -2.05
USP54Q70EL1 SSXP1-201ENST00000453640 473 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
USP54Q70EL1 RN7SKP234-201ENST00000517173 224 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.25□□□□□ -2.05
USP54Q70EL1 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.25□□□□□ -2.05
USP54Q70EL1 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.25□□□□□ -2.05
USP54Q70EL1 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.25□□□□□ -2.05
USP54Q70EL1 AC011472.4-201ENST00000615848 491 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC006065.5-201ENST00000623427 349 ntBASIC2.25□□□□□ -2.05
USP54Q70EL1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
USP54Q70EL1 MTND5P3-201ENST00000438536 1800 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.24□□□□□ -2.05
USP54Q70EL1 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.24□□□□□ -2.05
USP54Q70EL1 AC103710.2-202ENST00000641454 2853 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.24□□□□□ -2.05
USP54Q70EL1 RPS15AP7-201ENST00000439294 405 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 BNIP3P2-201ENST00000441221 577 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 AC104472.2-201ENST00000469035 601 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 AC079203.1-201ENST00000487972 404 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC2.24□□□□□ -2.05
USP54Q70EL1 AC007375.1-201ENST00000554513 578 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 WISP1-OT1-201ENST00000602893 642 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.24□□□□□ -2.05
USP54Q70EL1 ZNF876P-202ENST00000398732 1485 ntBASIC2.24□□□□□ -2.05
USP54Q70EL1 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
USP54Q70EL1 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
USP54Q70EL1 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.23□□□□□ -2.05
USP54Q70EL1 Y_RNA.122-201ENST00000363331 96 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 Y_RNA.224-201ENST00000364308 111 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 RNU6-707P-201ENST00000364647 95 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 SNORD48-201ENST00000364953 64 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 AP000567.1-201ENST00000406413 156 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 HNRNPDP2-201ENST00000406475 478 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.23□□□□□ -2.05
USP54Q70EL1 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC2.23□□□□□ -2.05
USP54Q70EL1 AC104308.1-201ENST00000454621 333 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 AC092798.1-201ENST00000458542 409 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC2.23□□□□□ -2.05
USP54Q70EL1 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.23□□□□□ -2.05
USP54Q70EL1 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.23□□□□□ -2.05
USP54Q70EL1 RNU1-61P-201ENST00000516107 151 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 AC239860.2-201ENST00000525886 270 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 SYF2P1-201ENST00000550658 413 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.23□□□□□ -2.05
USP54Q70EL1 SNRPGP15-201ENST00000600149 222 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 AL645939.4-201ENST00000604495 135 ntBASIC2.23□□□□□ -2.05
USP54Q70EL1 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
USP54Q70EL1 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
USP54Q70EL1 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
USP54Q70EL1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP54Q70EL1 RNY1P14-201ENST00000384426 108 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP54Q70EL1 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP54Q70EL1 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.22□□□□□ -2.05
USP54Q70EL1 MTND1P23-201ENST00000416931 372 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.22□□□□□ -2.05
USP54Q70EL1 RPL7P37-201ENST00000425095 738 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 HMGB1P45-201ENST00000435986 653 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
USP54Q70EL1 RPL37P6-202ENST00000464216 403 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.22□□□□□ -2.05
USP54Q70EL1 MTCYBP37-201ENST00000510642 1133 ntBASIC2.22□□□□□ -2.05
USP54Q70EL1 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC2.22□□□□□ -2.05
USP54Q70EL1 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.22□□□□□ -2.05
USP54Q70EL1 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.22□□□□□ -2.05
USP54Q70EL1 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.22□□□□□ -2.05
USP54Q70EL1 PCNAP1-202ENST00000595299 752 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms