Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC1.39□□□□□ -2.19
USF3Q68DE3 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
USF3Q68DE3 RNU6-356P-201ENST00000384140 107 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 HMGB1P10-201ENST00000395823 563 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 RPL31P52-201ENST00000407532 367 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 TRAPPC2P9-201ENST00000434556 343 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC1.39□□□□□ -2.19
USF3Q68DE3 AC069528.1-202ENST00000482888 637 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 HMGN1P7-201ENST00000491722 313 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 AC023050.1-201ENST00000498198 304 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 FABP5P6-201ENST00000510588 409 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.39□□□□□ -2.19
USF3Q68DE3 MTND2P17-201ENST00000550281 688 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.39□□□□□ -2.19
USF3Q68DE3 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
USF3Q68DE3 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
USF3Q68DE3 RNY1P14-201ENST00000384426 108 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 RN7SKP101-201ENST00000411376 320 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC1.39□□□□□ -2.19
USF3Q68DE3 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.39□□□□□ -2.19
USF3Q68DE3 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC1.39□□□□□ -2.19
USF3Q68DE3 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.39□□□□□ -2.19
USF3Q68DE3 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC1.39□□□□□ -2.19
USF3Q68DE3 SUMO1P4-201ENST00000429430 302 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC1.39□□□□□ -2.19
USF3Q68DE3 DPPA3P1-201ENST00000448050 469 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 AC135721.1-201ENST00000497954 479 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 AC092436.3-201ENST00000511788 257 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
USF3Q68DE3 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC1.39□□□□□ -2.19
USF3Q68DE3 uc_338.5-201ENST00000611839 155 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 RMST_2.1-201ENST00000617263 136 ntBASIC1.39□□□□□ -2.19
USF3Q68DE3 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
USF3Q68DE3 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC1.38□□□□□ -2.19
USF3Q68DE3 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
USF3Q68DE3 RNU1-42P-201ENST00000364033 160 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 RNU6-461P-201ENST00000364195 107 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 Y_RNA.224-201ENST00000364308 111 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AL035405.1-201ENST00000400795 710 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 RNU6-174P-201ENST00000410406 106 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AC098592.2-201ENST00000413158 265 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 PSMA2P3-201ENST00000429685 675 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.38□□□□□ -2.19
USF3Q68DE3 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC1.38□□□□□ -2.19
USF3Q68DE3 AC104472.2-201ENST00000469035 601 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC1.38□□□□□ -2.19
USF3Q68DE3 AL161670.1-201ENST00000554348 137 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 MTCO3P24-201ENST00000572729 782 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AC010928.2-201ENST00000588017 287 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AL645939.4-201ENST00000604495 135 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AC034236.3-201ENST00000605999 461 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AC018754.1-201ENST00000607486 925 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AC022079.2-201ENST00000619739 566 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.38□□□□□ -2.19
USF3Q68DE3 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC1.38□□□□□ -2.19
USF3Q68DE3 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC1.38□□□□□ -2.19
USF3Q68DE3 HMGN1P8-201ENST00000463578 288 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 HMGB1P47-201ENST00000511281 589 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.38□□□□□ -2.19
USF3Q68DE3 RNA5SP108-201ENST00000605921 117 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 AC105429.2-201ENST00000610567 517 ntBASIC1.38□□□□□ -2.19
USF3Q68DE3 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC1.37□□□□□ -2.19
USF3Q68DE3 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
USF3Q68DE3 AC233981.2-201ENST00000611524 1614 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.37□□□□□ -2.19
USF3Q68DE3 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
USF3Q68DE3 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
USF3Q68DE3 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.37□□□□□ -2.19
USF3Q68DE3 LSM5-205ENST00000409952 687 ntTSL 4 BASIC1.37□□□□□ -2.19
USF3Q68DE3 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.37□□□□□ -2.19
USF3Q68DE3 TRGV6-201ENST00000417928 299 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 AL353898.1-201ENST00000444055 238 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.37□□□□□ -2.19
USF3Q68DE3 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.37□□□□□ -2.19
USF3Q68DE3 RNU6-347P-201ENST00000516658 105 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 AC015720.1-201ENST00000565251 277 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC1.37□□□□□ -2.19
USF3Q68DE3 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
USF3Q68DE3 AC024560.3-201ENST00000608482 349 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 MIR6840-201ENST00000611937 71 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 uc_338.20-201ENST00000621563 178 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 LINC00216-201ENST00000623548 1126 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 AC106730.3-201ENST00000624568 641 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.37□□□□□ -2.19
USF3Q68DE3 MTCO1P4-201ENST00000520516 1409 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
USF3Q68DE3 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
USF3Q68DE3 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
USF3Q68DE3 AC009487.4-201ENST00000624969 3585 ntBASIC1.37□□□□□ -2.19
USF3Q68DE3 CENPCP1-201ENST00000533085 2578 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 SNORD114-26-201ENST00000363543 72 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 MIR613-201ENST00000385248 95 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 RNA5SP105-201ENST00000391123 113 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 ELOCP6-201ENST00000429066 328 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 MOB1AP2-201ENST00000446060 614 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 AC104308.1-201ENST00000454621 333 ntBASIC1.36□□□□□ -2.19
USF3Q68DE3 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC1.36□□□□□ -2.19
USF3Q68DE3 ELOCP12-201ENST00000458706 328 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms