Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 Z73417.1-201ENST00000447373 778 ntBASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 MTCYBP37-201ENST00000510642 1133 ntBASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 AF279873.1-201ENST00000523393 313 ntBASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 MIR6864-201ENST00000617935 70 ntBASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC88AQ3V6T2 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC88AQ3V6T2 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC88AQ3V6T2 RPL23AP47-201ENST00000408017 460 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 MIR1323-201ENST00000408090 73 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 XKRYP6-201ENST00000440468 1116 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 XKRYP3-201ENST00000442113 1116 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 BX322784.1-201ENST00000455793 1077 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 RPS26P21-201ENST00000475397 348 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC079804.2-201ENST00000490376 200 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AIG1P1-201ENST00000503376 148 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 OR4V1P-201ENST00000525394 1140 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 MIR499A-201ENST00000384903 122 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 MIR607-201ENST00000385241 96 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 MIR1276-201ENST00000408707 83 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC092638.1-201ENST00000411966 1275 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC234782.4-201ENST00000417646 1048 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 MTCO1P57-201ENST00000432182 261 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 MLLT10P2-201ENST00000506434 249 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC090071.1-201ENST00000507713 644 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 SNORA25.15-201ENST00000516487 89 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 NOP56P3-201ENST00000549457 385 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC115085.1-201ENST00000588924 229 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC009314.1-201ENST00000603871 304 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 AC010678.1-201ENST00000614118 713 ntBASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.33□□□□□ -2.04
CCDC88AQ3V6T2 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 LAMTOR3P1-201ENST00000428620 370 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 HIGD1AP11-201ENST00000438361 280 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AC108157.1-201ENST00000510511 539 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 MTCO2P32-201ENST00000514865 403 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 RNU1-40P-201ENST00000516816 164 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 RNU1-97P-201ENST00000516872 164 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 snoZ278.1-201ENST00000517059 112 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 RNA5SP490-201ENST00000517141 136 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 RNU6-889P-201ENST00000517189 103 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 SYF2P1-201ENST00000550658 413 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AC074029.2-201ENST00000551045 634 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AL163153.1-201ENST00000554223 283 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 RPS3AP4-201ENST00000555161 764 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 AL035411.2-201ENST00000604022 421 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 Y_RNA.783-201ENST00000613546 102 ntBASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC88AQ3V6T2 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 RPL19P1-201ENST00000411635 428 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AC023128.2-201ENST00000420880 1223 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 ENOX1-AS2-201ENST00000434273 609 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AP000852.1-201ENST00000472460 573 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 MIR3683-201ENST00000580847 82 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AL138880.2-201ENST00000616214 239 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AL121594.5-201ENST00000631724 573 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 OR51B8P-201ENST00000449892 769 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AL163540.1-201ENST00000485382 386 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AC008885.2-201ENST00000509506 930 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 HSPE1P14-201ENST00000605812 302 ntBASIC2.31□□□□□ -2.04
CCDC88AQ3V6T2 HMGN2P28-201ENST00000606102 262 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 118.8 ms