Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 FNDC3CP-201ENST00000420795 1155 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXF1Q12946 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXF1Q12946 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
FOXF1Q12946 OFD1P12Y-201ENST00000427963 1207 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 OFD1P13Y-201ENST00000431179 1232 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 MYL8P-204ENST00000431574 518 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 RPL17P35-201ENST00000432217 549 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXF1Q12946 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXF1Q12946 RPL23AP49-201ENST00000492925 468 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXF1Q12946 RPL37P25-201ENST00000507308 276 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC118282.2-201ENST00000508739 374 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXF1Q12946 SNORA31.8-201ENST00000516327 108 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AP000790.1-201ENST00000528891 737 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC091564.4-201ENST00000533934 2194 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC087241.2-201ENST00000535801 324 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.04□□□□□ -2.08
FOXF1Q12946 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.04□□□□□ -2.08
FOXF1Q12946 MTCO1P40-201ENST00000574371 625 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 MIR4435-1-201ENST00000582552 80 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 RN7SL622P-201ENST00000585292 275 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXF1Q12946 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
FOXF1Q12946 MIR6076-201ENST00000617521 113 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC130650.2-201ENST00000618736 2403 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 AC073592.7-201ENST00000623659 507 ntBASIC2.04□□□□□ -2.08
FOXF1Q12946 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.04□□□□□ -2.08
FOXF1Q12946 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
FOXF1Q12946 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.03□□□□□ -2.08
FOXF1Q12946 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
FOXF1Q12946 AC012321.1-201ENST00000561622 1588 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
FOXF1Q12946 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
FOXF1Q12946 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
FOXF1Q12946 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
FOXF1Q12946 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
FOXF1Q12946 RNU6-799P-201ENST00000363567 107 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
FOXF1Q12946 MTND4LP20-201ENST00000402379 270 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AL139098.1-201ENST00000407291 389 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXF1Q12946 UBE2D3P2-201ENST00000424409 445 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 ATP5F1P1-201ENST00000433775 569 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AC023590.1-204ENST00000434023 431 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXF1Q12946 RPL7P36-201ENST00000444633 681 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.03□□□□□ -2.08
FOXF1Q12946 SEPT14P24-201ENST00000447236 180 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXF1Q12946 OR51B8P-201ENST00000449892 769 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXF1Q12946 NAP1L1P3-201ENST00000462291 880 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 VPS26AP1-201ENST00000483197 979 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AC096751.1-202ENST00000502691 1067 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
FOXF1Q12946 MTND2P31-201ENST00000512602 616 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AC118465.1-201ENST00000513820 1271 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 RPPH1-2P-201ENST00000516688 293 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 RNA5SP135-201ENST00000517019 125 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
FOXF1Q12946 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXF1Q12946 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXF1Q12946 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC2.03□□□□□ -2.08
FOXF1Q12946 ACTR3BP3-201ENST00000565577 979 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 ISCA1P3-201ENST00000577104 373 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AL020997.3-201ENST00000602843 359 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC2.03□□□□□ -2.08
FOXF1Q12946 AC009570.1-201ENST00000609599 745 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC2.03□□□□□ -2.08
FOXF1Q12946 AC008083.4-201ENST00000615076 444 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AC140725.3-201ENST00000616193 880 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AL138880.2-201ENST00000616214 239 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 AC098679.5-201ENST00000624394 571 ntBASIC2.03□□□□□ -2.08
FOXF1Q12946 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
FOXF1Q12946 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
FOXF1Q12946 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.03□□□□□ -2.09
FOXF1Q12946 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXF1Q12946 AC005336.3-201ENST00000623833 2679 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
FOXF1Q12946 OR6C76-201ENST00000328314 939 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
FOXF1Q12946 RPL21P132-201ENST00000331267 462 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 RNU6-251P-201ENST00000363235 104 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 RNU1-73P-201ENST00000383971 164 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
FOXF1Q12946 AL133384.1-201ENST00000412744 351 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 AF274854.1-201ENST00000413236 615 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 USP9YP27-201ENST00000418455 438 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 UBE2D3P3-201ENST00000426992 425 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXF1Q12946 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXF1Q12946 MTND2P19-201ENST00000449129 1012 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.02□□□□□ -2.09
FOXF1Q12946 AC079804.2-201ENST00000490376 200 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.02□□□□□ -2.09
FOXF1Q12946 MTCO2P9-201ENST00000503214 694 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 AC008628.1-201ENST00000508663 265 ntBASIC2.02□□□□□ -2.09
FOXF1Q12946 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms