Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNU2-37P-201ENST00000410695 177 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 HMGB1P47-201ENST00000511281 589 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.17□□□□□ -2.22
PRKDCP78527 AC012150.2-201ENST00000621300 544 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.17□□□□□ -2.22
PRKDCP78527 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC1.17□□□□□ -2.22
PRKDCP78527 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.17□□□□□ -2.22
PRKDCP78527 RNA5SP160-201ENST00000364866 120 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AC234781.2-201ENST00000426370 994 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.17□□□□□ -2.22
PRKDCP78527 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.17□□□□□ -2.22
PRKDCP78527 VN1R96P-201ENST00000446052 858 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 AC012170.1-201ENST00000495139 359 ntBASIC1.17□□□□□ -2.22
PRKDCP78527 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.17□□□□□ -2.22
PRKDCP78527 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC1.17□□□□□ -2.22
PRKDCP78527 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 ARF4P2-201ENST00000430209 526 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 RPL21P2-201ENST00000440049 481 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC1.16□□□□□ -2.22
PRKDCP78527 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC1.16□□□□□ -2.22
PRKDCP78527 AC104581.2-201ENST00000572227 430 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.16□□□□□ -2.22
PRKDCP78527 AC022513.1-201ENST00000624512 117 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.16□□□□□ -2.22
PRKDCP78527 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
PRKDCP78527 SNORD48-201ENST00000364953 64 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
PRKDCP78527 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.16□□□□□ -2.22
PRKDCP78527 RNA5SP62-201ENST00000363457 110 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 RN7SKP101-201ENST00000411376 320 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.16□□□□□ -2.22
PRKDCP78527 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC1.16□□□□□ -2.22
PRKDCP78527 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.16□□□□□ -2.22
PRKDCP78527 MIR1273G-201ENST00000577677 100 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC1.16□□□□□ -2.22
PRKDCP78527 ABI1P1-201ENST00000603375 1120 ntBASIC1.16□□□□□ -2.22
PRKDCP78527 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.15□□□□□ -2.22
PRKDCP78527 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC1.15□□□□□ -2.22
PRKDCP78527 RNU6-225P-201ENST00000384613 103 ntBASIC1.15□□□□□ -2.22
PRKDCP78527 MIR124-3-201ENST00000384866 87 ntBASIC1.15□□□□□ -2.22
PRKDCP78527 AL513185.2-201ENST00000425543 193 ntBASIC1.15□□□□□ -2.22
PRKDCP78527 AC090255.1-201ENST00000495779 349 ntBASIC1.15□□□□□ -2.22
PRKDCP78527 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.15□□□□□ -2.22
PRKDCP78527 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.15□□□□□ -2.22
PRKDCP78527 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC1.15□□□□□ -2.22
PRKDCP78527 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC1.15□□□□□ -2.22
PRKDCP78527 DDX43P2-201ENST00000604753 1354 ntBASIC1.15□□□□□ -2.22
PRKDCP78527 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC1.15□□□□□ -2.23
PRKDCP78527 MTCO1P14-201ENST00000441695 1559 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC005336.3-201ENST00000623833 2679 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 SNORA62.2-201ENST00000364672 152 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 DPPA2P1-201ENST00000428060 556 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 FTH1P12-201ENST00000432137 551 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.15□□□□□ -2.23
PRKDCP78527 HAR1A.1-201ENST00000459583 118 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC104435.1-201ENST00000483483 166 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.15□□□□□ -2.23
PRKDCP78527 AC023825.1-201ENST00000566704 1030 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.15□□□□□ -2.23
PRKDCP78527 AC018754.1-201ENST00000607486 925 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC012531.5-201ENST00000611375 151 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC023128.2-201ENST00000420880 1223 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
PRKDCP78527 NDUFS5P3-201ENST00000450668 321 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC1.15□□□□□ -2.23
PRKDCP78527 AC087241.2-201ENST00000535801 324 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.15□□□□□ -2.23
PRKDCP78527 AC023813.2-201ENST00000564321 469 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.15□□□□□ -2.23
PRKDCP78527 AC099778.2-201ENST00000610904 211 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 VN1R74P-201ENST00000613259 503 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 AC132825.8-201ENST00000640783 297 ntBASIC1.15□□□□□ -2.23
PRKDCP78527 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC1.15□□□□□ -2.23
PRKDCP78527 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.15□□□□□ -2.23
PRKDCP78527 RNU4-51P-201ENST00000364206 140 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.14□□□□□ -2.23
PRKDCP78527 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.14□□□□□ -2.23
PRKDCP78527 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.14□□□□□ -2.23
PRKDCP78527 MTCYBP18-201ENST00000501056 747 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 AC105313.1-201ENST00000509121 353 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC1.14□□□□□ -2.23
PRKDCP78527 MIR4512-201ENST00000583257 77 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
PRKDCP78527 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.14□□□□□ -2.23
PRKDCP78527 HMGB1P13-201ENST00000406019 642 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 AF274854.1-201ENST00000413236 615 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 MTCO3P30-201ENST00000426425 670 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 RPS3AP22-201ENST00000488297 769 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 ARL2BPP4-201ENST00000506854 471 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC1.14□□□□□ -2.23
PRKDCP78527 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
PRKDCP78527 SUB1P4-201ENST00000566062 339 ntBASIC1.14□□□□□ -2.23
PRKDCP78527 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.14□□□□□ -2.23
PRKDCP78527 AC008687.2-201ENST00000597865 520 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms