Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC103783.1-201ENST00000520506 373 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC2.2□□□□□ -2.06
FOXA1P55317 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.2□□□□□ -2.06
FOXA1P55317 AC105137.2-201ENST00000569073 466 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA1P55317 MIR5007-201ENST00000583098 95 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA1P55317 AC128687.1-201ENST00000605304 619 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC006329.2-201ENST00000611491 394 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC068831.7-201ENST00000616954 363 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 AC018755.4-201ENST00000619715 454 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 RBM12B-AS1-201ENST00000623283 653 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA1P55317 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA1P55317 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC2.2□□□□□ -2.06
FOXA1P55317 AC138915.1-201ENST00000565427 1685 ntBASIC2.2□□□□□ -2.06
FOXA1P55317 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA1P55317 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA1P55317 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.2□□□□□ -2.06
FOXA1P55317 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.2□□□□□ -2.06
FOXA1P55317 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.2□□□□□ -2.06
FOXA1P55317 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
FOXA1P55317 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
FOXA1P55317 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC2.19□□□□□ -2.06
FOXA1P55317 RNU6-251P-201ENST00000363235 104 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 RNU6-839P-201ENST00000363347 108 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 SNORD82-201ENST00000365530 70 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 CRP-202ENST00000368110 667 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXA1P55317 AL136133.1-201ENST00000413694 376 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AC027644.1-201ENST00000419595 298 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 MTCYBP15-201ENST00000433123 1127 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA1P55317 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXA1P55317 AC126389.1-201ENST00000477436 290 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 VPS26AP1-201ENST00000483197 979 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AC104435.1-201ENST00000483483 166 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 RN7SL636P-201ENST00000497504 294 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 GZMAP1-201ENST00000503054 631 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 SEM1P1-201ENST00000506694 209 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 TTC39CP1-201ENST00000512513 755 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 MTCO3P27-201ENST00000514397 196 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC2.19□□□□□ -2.06
FOXA1P55317 ARL2BPP5-201ENST00000523141 481 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXA1P55317 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC2.19□□□□□ -2.06
FOXA1P55317 NRBF2P5-201ENST00000603087 788 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AP000238.1-201ENST00000608759 426 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AP005137.2-201ENST00000609238 400 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AC084824.5-201ENST00000612009 413 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 SNHG22-203ENST00000617833 660 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AC009159.1-201ENST00000618386 642 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AC092650.2-201ENST00000619984 902 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 AC009318.4-201ENST00000620496 486 ntBASIC2.19□□□□□ -2.06
FOXA1P55317 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC2.19□□□□□ -2.06
FOXA1P55317 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
FOXA1P55317 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA1P55317 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
FOXA1P55317 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA1P55317 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.18□□□□□ -2.06
FOXA1P55317 SNORA63.3-201ENST00000362682 132 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AL031679.1-201ENST00000400616 525 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 FO393413.1-201ENST00000402892 195 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AL355615.1-201ENST00000406187 641 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AL133264.1-201ENST00000407157 562 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AL133384.1-201ENST00000412744 351 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.18□□□□□ -2.06
FOXA1P55317 HMGB1P11-201ENST00000413899 637 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXA1P55317 OFD1P2Y-201ENST00000421895 1149 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC233728.2-201ENST00000425348 757 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 MTCYBP32-201ENST00000427945 1084 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.18□□□□□ -2.06
FOXA1P55317 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA1P55317 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA1P55317 AC010301.1-201ENST00000473936 355 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 GAPDHP39-201ENST00000481866 979 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA1P55317 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA1P55317 NAMPTP2-201ENST00000505629 1115 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA1P55317 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA1P55317 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
FOXA1P55317 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC2.18□□□□□ -2.06
FOXA1P55317 AP003355.1-201ENST00000518956 587 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 CYB5AP5-201ENST00000549779 389 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC093519.1-201ENST00000566109 298 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 MIR4666A-201ENST00000580160 79 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC090330.1-201ENST00000588646 764 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC2.18□□□□□ -2.06
FOXA1P55317 AP001542.2-201ENST00000593141 364 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 MTATP6P2-201ENST00000603319 678 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AL049779.4-201ENST00000604500 156 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 RPL21P136-201ENST00000605378 396 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC120053.1-201ENST00000607706 736 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC107294.1-201ENST00000609524 467 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC040168.1-201ENST00000623594 991 ntBASIC2.18□□□□□ -2.06
FOXA1P55317 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC2.18□□□□□ -2.06
FOXA1P55317 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms