Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
COPB1P53618 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COPB1P53618 XIAPP3-201ENST00000312918 795 ntBASIC4.08□□□□□ -1.76
COPB1P53618 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COPB1P53618 RNA5SP258-201ENST00000362750 119 ntBASIC4.08□□□□□ -1.76
COPB1P53618 RNU4-1-201ENST00000363925 141 ntBASIC4.08□□□□□ -1.76
COPB1P53618 Y_RNA.303-201ENST00000364998 94 ntBASIC4.08□□□□□ -1.76
COPB1P53618 RNU6-1207P-201ENST00000384343 107 ntBASIC4.08□□□□□ -1.76
COPB1P53618 Y_RNA.548-201ENST00000384656 105 ntBASIC4.08□□□□□ -1.76
COPB1P53618 RNU6-780P-201ENST00000391030 104 ntBASIC4.08□□□□□ -1.76
COPB1P53618 RPL23AP32-201ENST00000395315 459 ntBASIC4.08□□□□□ -1.76
COPB1P53618 MTND4LP20-201ENST00000402379 270 ntBASIC4.08□□□□□ -1.76
COPB1P53618 Z98941.1-201ENST00000407764 100 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AMD1P2-201ENST00000412936 992 ntBASIC4.08□□□□□ -1.76
COPB1P53618 HMGB3P20-201ENST00000417997 600 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COPB1P53618 HSPA8P1-201ENST00000425843 1833 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AL451062.2-201ENST00000427515 271 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AC073464.1-201ENST00000429823 534 ntBASIC4.08□□□□□ -1.76
COPB1P53618 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.08□□□□□ -1.76
COPB1P53618 RPL31P35-201ENST00000431058 377 ntBASIC4.08□□□□□ -1.76
COPB1P53618 MTCO2P11-201ENST00000431069 680 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AC104850.1-201ENST00000435940 476 ntBASIC4.08□□□□□ -1.76
COPB1P53618 ARPC3P1-201ENST00000437218 533 ntBASIC4.08□□□□□ -1.76
COPB1P53618 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
COPB1P53618 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC4.08□□□□□ -1.76
COPB1P53618 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.08□□□□□ -1.76
COPB1P53618 AC132479.1-201ENST00000449160 144 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.08□□□□□ -1.76
COPB1P53618 BX276092.4-201ENST00000452056 248 ntBASIC4.08□□□□□ -1.76
COPB1P53618 HMGB3P21-201ENST00000452483 547 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AC092989.1-201ENST00000481235 277 ntBASIC4.08□□□□□ -1.76
COPB1P53618 RPS3AP50-201ENST00000487064 803 ntBASIC4.08□□□□□ -1.76
COPB1P53618 OR5H5P-201ENST00000503164 928 ntBASIC4.08□□□□□ -1.76
COPB1P53618 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COPB1P53618 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC4.08□□□□□ -1.76
COPB1P53618 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC4.08□□□□□ -1.76
COPB1P53618 AC021146.1-201ENST00000511202 716 ntBASIC4.08□□□□□ -1.76
COPB1P53618 FTH1P21-201ENST00000512179 511 ntBASIC4.08□□□□□ -1.76
COPB1P53618 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC4.08□□□□□ -1.76
COPB1P53618 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COPB1P53618 RNA5SP164-201ENST00000516533 110 ntBASIC4.08□□□□□ -1.76
COPB1P53618 SCARNA14-201ENST00000516903 136 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AC118273.2-201ENST00000532092 465 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AC024224.1-201ENST00000538284 609 ntBASIC4.08□□□□□ -1.76
COPB1P53618 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.08□□□□□ -1.76
COPB1P53618 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.08□□□□□ -1.76
COPB1P53618 AC008011.1-201ENST00000545989 227 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.08□□□□□ -1.76
COPB1P53618 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.08□□□□□ -1.76
COPB1P53618 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.08□□□□□ -1.76
COPB1P53618 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.08□□□□□ -1.76
COPB1P53618 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.08□□□□□ -1.76
COPB1P53618 AC068135.2-201ENST00000569293 1028 ntBASIC4.08□□□□□ -1.76
COPB1P53618 UBE2L4-201ENST00000587688 464 ntBASIC4.08□□□□□ -1.76
COPB1P53618 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.08□□□□□ -1.76
COPB1P53618 AL158801.5-201ENST00000623123 465 ntBASIC4.08□□□□□ -1.76
COPB1P53618 AL008636.1-201ENST00000625038 1018 ntBASIC4.08□□□□□ -1.76
COPB1P53618 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.08□□□□□ -1.76
COPB1P53618 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
COPB1P53618 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COPB1P53618 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COPB1P53618 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COPB1P53618 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COPB1P53618 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.07□□□□□ -1.76
COPB1P53618 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.07□□□□□ -1.76
COPB1P53618 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.07□□□□□ -1.76
COPB1P53618 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.07□□□□□ -1.76
COPB1P53618 RN7SKP280-201ENST00000364196 304 ntBASIC4.07□□□□□ -1.76
COPB1P53618 RNU6-359P-201ENST00000365466 108 ntBASIC4.07□□□□□ -1.76
COPB1P53618 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COPB1P53618 RNU6-213P-201ENST00000384051 104 ntBASIC4.07□□□□□ -1.76
COPB1P53618 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COPB1P53618 U3.29-201ENST00000391296 212 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AL138878.1-201ENST00000405131 347 ntBASIC4.07□□□□□ -1.76
COPB1P53618 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.07□□□□□ -1.76
COPB1P53618 AC233728.2-201ENST00000425348 757 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AL138785.1-201ENST00000425821 331 ntBASIC4.07□□□□□ -1.76
COPB1P53618 MTCO2P19-201ENST00000427513 598 ntBASIC4.07□□□□□ -1.76
COPB1P53618 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.07□□□□□ -1.76
COPB1P53618 VN1R34P-201ENST00000447387 883 ntBASIC4.07□□□□□ -1.76
COPB1P53618 RPL7P52-201ENST00000449200 742 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.07□□□□□ -1.76
COPB1P53618 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC4.07□□□□□ -1.76
COPB1P53618 RPL31P58-201ENST00000469001 379 ntBASIC4.07□□□□□ -1.76
COPB1P53618 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.07□□□□□ -1.76
COPB1P53618 THAP6-203ENST00000502620 582 ntTSL 3 BASIC4.07□□□□□ -1.76
COPB1P53618 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.07□□□□□ -1.76
COPB1P53618 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.07□□□□□ -1.76
COPB1P53618 MTCO3P44-201ENST00000510977 541 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AP003497.1-201ENST00000528472 562 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COPB1P53618 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.07□□□□□ -1.76
COPB1P53618 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.07□□□□□ -1.76
COPB1P53618 HMGB1P33-201ENST00000563485 527 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AC090615.1-201ENST00000577519 154 ntBASIC4.07□□□□□ -1.76
COPB1P53618 MIR4429-201ENST00000580105 73 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AC006504.3-201ENST00000586818 523 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AL391646.1-201ENST00000603860 190 ntBASIC4.07□□□□□ -1.76
COPB1P53618 AC104458.1-201ENST00000608243 463 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms