Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.79□□□□□ -1.8
PTPN9P43378 AC010975.2-201ENST00000427781 588 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.79□□□□□ -1.8
PTPN9P43378 KLF3P2-201ENST00000465138 268 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AC055855.1-201ENST00000489563 579 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 MTND2P33-201ENST00000506452 1031 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTPN9P43378 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.79□□□□□ -1.8
PTPN9P43378 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.79□□□□□ -1.8
PTPN9P43378 AL121603.1-201ENST00000553815 142 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AL391156.1-201ENST00000554965 554 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
PTPN9P43378 AL121576.1-201ENST00000556055 276 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AL356432.3-201ENST00000568952 465 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AC010928.3-201ENST00000587712 541 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC3.79□□□□□ -1.8
PTPN9P43378 AC068790.3-201ENST00000602988 553 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AC012669.1-201ENST00000603209 283 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.79□□□□□ -1.8
PTPN9P43378 AC006566.1-201ENST00000608943 513 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AL355472.4-201ENST00000610233 626 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AC012531.5-201ENST00000611375 151 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.79□□□□□ -1.8
PTPN9P43378 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC3.79□□□□□ -1.8
PTPN9P43378 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.79□□□□□ -1.8
PTPN9P43378 AC244258.1-201ENST00000637553 1071 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
PTPN9P43378 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
PTPN9P43378 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.79□□□□□ -1.8
PTPN9P43378 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.79□□□□□ -1.8
PTPN9P43378 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
PTPN9P43378 AL138713.1-201ENST00000624026 2130 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 AC006504.1-201ENST00000562493 3666 ntBASIC3.79□□□□□ -1.8
PTPN9P43378 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 AC092447.7-201ENST00000422212 1621 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 RNU6-1078P-201ENST00000364522 103 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 RNA5SP51-201ENST00000364750 119 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN9P43378 Y_RNA.582-201ENST00000391023 95 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AL590704.1-201ENST00000402856 794 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 ATP5A1P2-201ENST00000412323 255 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 SPA17P1-201ENST00000416656 452 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AL445584.1-201ENST00000431451 330 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC009961.2-201ENST00000435771 251 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC073614.1-201ENST00000438690 650 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.78□□□□□ -1.8
PTPN9P43378 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN9P43378 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.78□□□□□ -1.8
PTPN9P43378 CEACAMP4-201ENST00000457676 421 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 RPL7P15-201ENST00000461190 712 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AL672167.3-201ENST00000465951 960 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 FTH1P2-201ENST00000466086 412 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC096751.1-202ENST00000502691 1067 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC138853.1-201ENST00000503549 823 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.78□□□□□ -1.8
PTPN9P43378 Y_RNA.672-201ENST00000516289 104 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 DUXAP2-201ENST00000519198 589 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AP000907.2-201ENST00000530827 353 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN9P43378 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.78□□□□□ -1.8
PTPN9P43378 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.78□□□□□ -1.8
PTPN9P43378 HMGN1P30-201ENST00000589286 268 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN9P43378 AC068790.6-201ENST00000602558 258 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC121334.2-201ENST00000605387 271 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC091304.9-201ENST00000612091 226 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.78□□□□□ -1.8
PTPN9P43378 AC092628.2-201ENST00000622492 339 ntBASIC3.78□□□□□ -1.8
PTPN9P43378 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
PTPN9P43378 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.78□□□□□ -1.81
PTPN9P43378 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.78□□□□□ -1.81
PTPN9P43378 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.78□□□□□ -1.81
PTPN9P43378 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
PTPN9P43378 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN9P43378 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
PTPN9P43378 MTCO1P9-201ENST00000505577 1534 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
PTPN9P43378 Y_RNA.126-201ENST00000363382 111 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 Y_RNA.517-201ENST00000384551 106 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 U3.39-201ENST00000408569 239 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.77□□□□□ -1.81
PTPN9P43378 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN9P43378 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.77□□□□□ -1.81
PTPN9P43378 MTCO3P12-201ENST00000416718 547 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN9P43378 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN9P43378 RPL35AP22-201ENST00000436855 335 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.77□□□□□ -1.81
PTPN9P43378 AC092473.1-201ENST00000441098 221 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 AL121871.1-201ENST00000443413 436 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 RPS3AP46-201ENST00000448352 682 ntBASIC3.77□□□□□ -1.81
PTPN9P43378 GAPDHP17-201ENST00000449858 1001 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 116.2 ms