Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SOX3P41225 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.16□□□□□ -1.9
SOX3P41225 BX323014.1-201ENST00000412876 237 ntBASIC3.16□□□□□ -1.9
SOX3P41225 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.16□□□□□ -1.9
SOX3P41225 OR1AA1P-201ENST00000419597 916 ntBASIC3.16□□□□□ -1.9
SOX3P41225 CYCSP46-201ENST00000423569 204 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.16□□□□□ -1.9
SOX3P41225 ARF4P2-201ENST00000430209 526 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.16□□□□□ -1.9
SOX3P41225 MTND4P32-201ENST00000437189 1237 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.16□□□□□ -1.9
SOX3P41225 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.16□□□□□ -1.9
SOX3P41225 KATNBL1P3-201ENST00000443475 909 ntBASIC3.16□□□□□ -1.9
SOX3P41225 FAM103A2P-201ENST00000444122 354 ntBASIC3.16□□□□□ -1.9
SOX3P41225 RPL7P36-201ENST00000444633 681 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AL357552.1-201ENST00000445254 415 ntBASIC3.16□□□□□ -1.9
SOX3P41225 COX6CP12-201ENST00000446748 202 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.16□□□□□ -1.9
SOX3P41225 CFTRP1-201ENST00000456646 183 ntBASIC3.16□□□□□ -1.9
SOX3P41225 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.16□□□□□ -1.9
SOX3P41225 HMGN1P18-201ENST00000457642 277 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC021205.2-201ENST00000480069 347 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC080014.1-201ENST00000496877 1201 ntBASIC3.16□□□□□ -1.9
SOX3P41225 HMGB1P22-201ENST00000505315 124 ntBASIC3.16□□□□□ -1.9
SOX3P41225 HSPD1P15-201ENST00000505573 1122 ntBASIC3.16□□□□□ -1.9
SOX3P41225 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SOX3P41225 FCF1P8-201ENST00000510322 597 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.16□□□□□ -1.9
SOX3P41225 AC017037.2-201ENST00000513850 890 ntBASIC3.16□□□□□ -1.9
SOX3P41225 IGKV2-23-201ENST00000518729 323 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AP004371.1-201ENST00000525240 214 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SOX3P41225 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
SOX3P41225 AC004024.1-201ENST00000549244 247 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.16□□□□□ -1.9
SOX3P41225 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.16□□□□□ -1.9
SOX3P41225 AC034268.2-201ENST00000571784 482 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC007179.3-201ENST00000604976 235 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AC073114.1-201ENST00000612027 490 ntBASIC3.16□□□□□ -1.9
SOX3P41225 AL590099.1-201ENST00000615276 138 ntBASIC3.16□□□□□ -1.9
SOX3P41225 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.16□□□□□ -1.9
SOX3P41225 AC138649.5-201ENST00000637456 137 ntBASIC3.16□□□□□ -1.9
SOX3P41225 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.16□□□□□ -1.9
SOX3P41225 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
SOX3P41225 USP8P1-201ENST00000494673 3183 ntBASIC3.16□□□□□ -1.9
SOX3P41225 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
SOX3P41225 MFF-206ENST00000392059 1710 ntTSL 5 BASIC3.16□□□□□ -1.9
SOX3P41225 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
SOX3P41225 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
SOX3P41225 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
SOX3P41225 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.9
SOX3P41225 MTND4P4-201ENST00000439033 1366 ntBASIC3.15□□□□□ -1.9
SOX3P41225 CCT4P2-201ENST00000233836 1548 ntBASIC3.15□□□□□ -1.9
SOX3P41225 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
SOX3P41225 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SOX3P41225 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 RNY4P24-201ENST00000362735 96 ntBASIC3.15□□□□□ -1.91
SOX3P41225 RNU5F-6P-201ENST00000362979 116 ntBASIC3.15□□□□□ -1.91
SOX3P41225 RNA5SP197-201ENST00000363357 119 ntBASIC3.15□□□□□ -1.91
SOX3P41225 RNU6-853P-201ENST00000364306 107 ntBASIC3.15□□□□□ -1.91
SOX3P41225 U8.14-201ENST00000390843 143 ntBASIC3.15□□□□□ -1.91
SOX3P41225 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SOX3P41225 RAD23BP2-201ENST00000416003 1207 ntBASIC3.15□□□□□ -1.91
SOX3P41225 BX119904.4-201ENST00000424402 301 ntBASIC3.15□□□□□ -1.91
SOX3P41225 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
SOX3P41225 AC005019.1-201ENST00000436455 431 ntBASIC3.15□□□□□ -1.91
SOX3P41225 GDI2P2-201ENST00000445131 608 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC021382.1-201ENST00000483523 359 ntBASIC3.15□□□□□ -1.91
SOX3P41225 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC093663.1-201ENST00000497190 394 ntBASIC3.15□□□□□ -1.91
SOX3P41225 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.15□□□□□ -1.91
SOX3P41225 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.15□□□□□ -1.91
SOX3P41225 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.15□□□□□ -1.91
SOX3P41225 RN7SKP289-201ENST00000517244 295 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.15□□□□□ -1.91
SOX3P41225 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.15□□□□□ -1.91
SOX3P41225 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.15□□□□□ -1.91
SOX3P41225 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.15□□□□□ -1.91
SOX3P41225 AL845331.3-202ENST00000562856 261 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC087481.2-201ENST00000565492 330 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC012182.1-201ENST00000570133 895 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.15□□□□□ -1.91
SOX3P41225 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.15□□□□□ -1.91
SOX3P41225 NBR2-204ENST00000587322 63 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC067852.3-201ENST00000589177 561 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC006557.5-201ENST00000603126 811 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AL031176.1-201ENST00000604554 466 ntBASIC3.15□□□□□ -1.91
SOX3P41225 AC135507.1-201ENST00000607214 561 ntBASIC3.15□□□□□ -1.91
SOX3P41225 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.15□□□□□ -1.91
SOX3P41225 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
SOX3P41225 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.15□□□□□ -1.91
SOX3P41225 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.15□□□□□ -1.91
SOX3P41225 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms