Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 RNA5SP229-201ENST00000410809 99 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 RNA5SP31-201ENST00000411144 127 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 AL593851.1-201ENST00000426171 157 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC008850.1-201ENST00000427546 362 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC097713.2-201ENST00000430199 356 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 RPL7P36-201ENST00000444633 681 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 OR6C5P-201ENST00000452388 923 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 AC092754.2-201ENST00000463506 460 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 MTCYBP35-201ENST00000503630 1137 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 RN7SKP60-201ENST00000516985 239 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 SNORA31.22-201ENST00000517204 135 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC107934.2-201ENST00000518653 310 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD13P35453 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 AC006557.5-201ENST00000603126 811 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 PRELID3BP8-201ENST00000604148 295 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC018638.7-201ENST00000605836 1114 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD13P35453 AC091965.4-201ENST00000607691 587 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC107214.2-201ENST00000608204 634 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD13P35453 AL355365.1-201ENST00000616480 294 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AP000676.3-201ENST00000623299 569 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD13P35453 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD13P35453 AC006378.2-201ENST00000623178 2476 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 AL353746.1-201ENST00000566293 6881 ntBASIC3.66□□□□□ -1.82
HOXD13P35453 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.82
HOXD13P35453 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.65□□□□□ -1.82
HOXD13P35453 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD13P35453 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD13P35453 AC092125.1-201ENST00000562568 1995 ntBASIC3.65□□□□□ -1.82
HOXD13P35453 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD13P35453 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD13P35453 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD13P35453 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 SKINT1L-201ENST00000401057 817 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD13P35453 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD13P35453 NEK4P1-201ENST00000433383 879 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 AC098826.2-201ENST00000452011 651 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 RPL31P60-201ENST00000478450 367 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 RPL23AP41-201ENST00000484754 458 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 RPS3AP22-201ENST00000488297 769 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 AL133271.1-201ENST00000538229 291 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AC008015.1-201ENST00000555505 465 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 PCMTD1P2-201ENST00000565017 355 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 MIR1254-2-201ENST00000579553 63 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AC090616.2-202ENST00000584248 222 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AC008507.1-201ENST00000587506 734 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD13P35453 TPMTP1-201ENST00000592307 737 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AC068790.3-201ENST00000602988 553 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AC004908.2-201ENST00000609090 574 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AC093838.1-201ENST00000613014 469 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD13P35453 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD13P35453 AC006927.3-201ENST00000638789 384 ntBASIC3.65□□□□□ -1.83
HOXD13P35453 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD13P35453 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD13P35453 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD13P35453 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD13P35453 AC017071.1-201ENST00000564407 2204 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 AC007496.3-201ENST00000624987 3443 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.64□□□□□ -1.83
HOXD13P35453 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
HOXD13P35453 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD13P35453 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD13P35453 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD13P35453 SNORA23-201ENST00000365128 182 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
HOXD13P35453 RNU6-1197P-201ENST00000391183 107 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 RPS4XP3-201ENST00000398541 413 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 SNORA11-201ENST00000408789 128 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 RN7SKP285-201ENST00000410137 318 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD13P35453 AC011233.1-201ENST00000422812 283 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 AC018630.2-202ENST00000422992 927 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 AL445669.1-201ENST00000426743 755 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HOXD13P35453 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD13P35453 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD13P35453 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD13P35453 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD13P35453 SCARNA20.6-201ENST00000517251 106 ntBASIC3.64□□□□□ -1.83
HOXD13P35453 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms