Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.21□□□□□ -2.06
COL5A3P25940 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC2.21□□□□□ -2.06
COL5A3P25940 AC023512.1-201ENST00000444513 499 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.21□□□□□ -2.06
COL5A3P25940 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL5A3P25940 AC023050.1-201ENST00000498198 304 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 AC117532.1-201ENST00000514638 323 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 MIR449C-201ENST00000516047 92 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 AC104997.1-201ENST00000519761 717 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 AC087272.1-201ENST00000523624 533 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.21□□□□□ -2.06
COL5A3P25940 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC2.21□□□□□ -2.06
COL5A3P25940 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.21□□□□□ -2.06
COL5A3P25940 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
COL5A3P25940 MIR4474-201ENST00000579189 78 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.21□□□□□ -2.06
COL5A3P25940 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC2.21□□□□□ -2.06
COL5A3P25940 RN7SL622P-201ENST00000585292 275 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.21□□□□□ -2.06
COL5A3P25940 AL035411.2-201ENST00000604022 421 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 AL391834.1-201ENST00000609609 560 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 MIR8081-201ENST00000611533 95 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 MIR6779-201ENST00000617283 64 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.21□□□□□ -2.06
COL5A3P25940 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.21□□□□□ -2.06
COL5A3P25940 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.21□□□□□ -2.06
COL5A3P25940 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.21□□□□□ -2.06
COL5A3P25940 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
COL5A3P25940 AL512504.1-201ENST00000415494 778 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 MTND2P16-201ENST00000419987 799 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 CR848007.2-201ENST00000424918 787 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 RSL24D1P8-201ENST00000434442 492 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 USP9YP15-201ENST00000442391 422 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 HGF-207ENST00000453018 721 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 RPS26P21-201ENST00000475397 348 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AL163540.1-201ENST00000485382 386 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 SSR3-208ENST00000496050 579 ntTSL 4 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC074029.2-201ENST00000551045 634 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 AK6-205ENST00000618980 483 ntTSL 2 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC027514.1-201ENST00000588561 1603 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
COL5A3P25940 METTL21EP-201ENST00000298105 713 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AP000567.1-201ENST00000406413 156 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 MIR1276-201ENST00000408707 83 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 MTND4P11-201ENST00000417020 1058 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC114878.1-201ENST00000441166 358 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 Z73417.1-201ENST00000447373 778 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AL500527.1-201ENST00000448532 255 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 SSXP1-201ENST00000453640 473 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC2.2□□□□□ -2.06
COL5A3P25940 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC2.2□□□□□ -2.06
COL5A3P25940 MTCYBP17-201ENST00000503579 789 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 TRMT112P2-201ENST00000512910 132 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AC239860.2-201ENST00000525886 270 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.2□□□□□ -2.06
COL5A3P25940 AC011890.2-201ENST00000613393 294 ntBASIC2.2□□□□□ -2.06
COL5A3P25940 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
COL5A3P25940 AC012321.1-201ENST00000561622 1588 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL5A3P25940 RNU6-883P-201ENST00000384597 107 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.19□□□□□ -2.06
COL5A3P25940 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.19□□□□□ -2.06
COL5A3P25940 RPS15AP12-201ENST00000419498 388 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
COL5A3P25940 MTND5P8-201ENST00000449817 1083 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 TPMTP4-201ENST00000450749 678 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 USP9YP10-201ENST00000454868 628 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 RPS15AP1-201ENST00000457423 391 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC2.19□□□□□ -2.06
COL5A3P25940 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.19□□□□□ -2.06
COL5A3P25940 HPVC1-201ENST00000629899 1198 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL5A3P25940 MTND4P21-201ENST00000453886 1357 ntBASIC2.19□□□□□ -2.06
COL5A3P25940 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.18□□□□□ -2.06
COL5A3P25940 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL5A3P25940 AC005336.3-201ENST00000623833 2679 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC2.18□□□□□ -2.06
COL5A3P25940 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
COL5A3P25940 RNA5SP325-201ENST00000363756 130 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 SNORA27.3-201ENST00000364937 134 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 RNA5SP37-201ENST00000365420 130 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 MIR320B1-201ENST00000390209 79 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
COL5A3P25940 RN7SKP101-201ENST00000411376 320 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 MTND2P21-201ENST00000436242 1042 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC2.18□□□□□ -2.06
COL5A3P25940 MTND2P8-201ENST00000450555 1025 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 AMD1P1-201ENST00000457220 922 ntBASIC2.18□□□□□ -2.06
COL5A3P25940 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms