Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.82□□□□□ -1.64
COL6A1P12109 AC026427.2-201ENST00000506228 536 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 TXNP6-201ENST00000510190 310 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 OR4R1P-201ENST00000529879 463 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AP003385.6-201ENST00000531603 374 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 HPRT1P3-201ENST00000539521 576 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A1P12109 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A1P12109 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A1P12109 AC015912.2-201ENST00000571053 181 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AC005668.1-201ENST00000571142 476 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 MIR3118-1-201ENST00000581787 76 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.82□□□□□ -1.64
COL6A1P12109 AC093913.1-201ENST00000614178 329 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AL158196.1-201ENST00000616786 434 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 AC091953.2-201ENST00000623979 160 ntBASIC4.82□□□□□ -1.64
COL6A1P12109 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A1P12109 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
COL6A1P12109 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A1P12109 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A1P12109 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.82□□□□□ -1.64
COL6A1P12109 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A1P12109 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.82□□□□□ -1.64
COL6A1P12109 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
COL6A1P12109 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
COL6A1P12109 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL6A1P12109 KPNA2P2-201ENST00000419546 1489 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.81□□□□□ -1.64
COL6A1P12109 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A1P12109 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A1P12109 RNA5SP124-201ENST00000362739 110 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 RNU6-343P-201ENST00000364709 104 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 RNU6-359P-201ENST00000365466 108 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL6A1P12109 MIR3074-201ENST00000384885 81 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 RNU6-510P-201ENST00000391239 108 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AC016769.3-201ENST00000396562 315 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AL122016.1-201ENST00000403365 367 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AL162578.1-201ENST00000406202 378 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AL354719.1-201ENST00000406535 843 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC4.81□□□□□ -1.64
COL6A1P12109 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A1P12109 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A1P12109 MTCO3P46-201ENST00000425787 232 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.81□□□□□ -1.64
COL6A1P12109 RPL36AP53-201ENST00000432891 316 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A1P12109 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A1P12109 HMGN2P21-201ENST00000447764 270 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A1P12109 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A1P12109 AC233279.1-201ENST00000455300 423 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 RPL23AP41-201ENST00000484754 458 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AC078817.1-201ENST00000492623 435 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 RN7SL812P-201ENST00000493791 279 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 PCBP2P3-201ENST00000509726 843 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC4.81□□□□□ -1.64
COL6A1P12109 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A1P12109 TRMT10BP1-201ENST00000519377 943 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A1P12109 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.81□□□□□ -1.64
COL6A1P12109 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.81□□□□□ -1.64
COL6A1P12109 MIR5685-201ENST00000579080 79 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 AL354984.3-201ENST00000604803 325 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 Z84480.1-201ENST00000605131 311 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A1P12109 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
COL6A1P12109 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A1P12109 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC4.81□□□□□ -1.64
COL6A1P12109 TPTEP1-208ENST00000636884 213 ntBASIC4.81□□□□□ -1.64
COL6A1P12109 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A1P12109 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL6A1P12109 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.81□□□□□ -1.64
COL6A1P12109 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.81□□□□□ -1.64
COL6A1P12109 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.8□□□□□ -1.64
COL6A1P12109 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
COL6A1P12109 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
COL6A1P12109 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL6A1P12109 Y_RNA.67-201ENST00000362870 100 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 MIR7-3-201ENST00000384898 110 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 AL356421.1-201ENST00000403255 413 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 RNU2-9P-201ENST00000410194 145 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 RNA5SP36-201ENST00000410197 133 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.8□□□□□ -1.64
COL6A1P12109 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC4.8□□□□□ -1.64
COL6A1P12109 PDSS1P1-201ENST00000422953 1114 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC4.8□□□□□ -1.64
COL6A1P12109 AC079781.2-201ENST00000446424 169 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 MRPL50P4-201ENST00000446432 475 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 RNU7-63P-201ENST00000459054 62 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.8□□□□□ -1.64
COL6A1P12109 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.8□□□□□ -1.64
COL6A1P12109 RNU7-30P-201ENST00000516835 62 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 IGKV2D-36-201ENST00000518643 226 ntBASIC4.8□□□□□ -1.64
COL6A1P12109 AC087241.2-201ENST00000535801 324 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms