Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 RNA5SP311-201ENST00000411290 116 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AMD1P2-201ENST00000412936 992 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 AL691449.1-201ENST00000426570 421 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 AL139415.2-201ENST00000431968 163 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC024082.2-201ENST00000434771 238 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 snoU13.4-201ENST00000458916 104 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXN3O00409 RBM43P1-201ENST00000476891 1081 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 RPL31P13-201ENST00000484151 370 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 UBE2CP3-201ENST00000502715 450 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 VN1R104P-201ENST00000505115 1009 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 MTND2P33-201ENST00000506452 1031 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 FTH1P21-201ENST00000512179 511 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 RNA5SP315-201ENST00000516340 116 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 RNA5SP312-201ENST00000517068 116 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.2□□□□□ -1.74
FOXN3O00409 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXN3O00409 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXN3O00409 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC4.2□□□□□ -1.74
FOXN3O00409 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.2□□□□□ -1.74
FOXN3O00409 MIR4697-201ENST00000582977 78 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AL590392.1-201ENST00000604960 446 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC008277.2-201ENST00000605196 797 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC083809.1-201ENST00000615051 472 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC138649.3-201ENST00000622154 254 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AC095031.1-201ENST00000623685 672 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 AL138713.1-201ENST00000624026 2130 ntBASIC4.2□□□□□ -1.74
FOXN3O00409 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.2□□□□□ -1.74
FOXN3O00409 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXN3O00409 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
FOXN3O00409 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.2□□□□□ -1.74
FOXN3O00409 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
FOXN3O00409 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXN3O00409 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXN3O00409 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXN3O00409 PAPPA-AS1-201ENST00000445861 2450 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 DDX10P1-201ENST00000448545 1933 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 OR1S2-201ENST00000302592 978 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXN3O00409 SNORA70C-201ENST00000384538 135 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 RPS26P8-201ENST00000393490 348 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXN3O00409 MRPS10P2-201ENST00000431226 381 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 AL353572.1-201ENST00000442490 417 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 RPL21P89-201ENST00000444021 467 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXN3O00409 RPS24P6-201ENST00000452670 400 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.19□□□□□ -1.74
FOXN3O00409 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXN3O00409 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXN3O00409 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXN3O00409 RPL37P25-201ENST00000507308 276 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 RNU6-390P-201ENST00000516259 103 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 Vault.3-201ENST00000516676 95 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 RNA5SP337-201ENST00000517007 109 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 RNU6-840P-201ENST00000517275 65 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXN3O00409 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
FOXN3O00409 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXN3O00409 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXN3O00409 AC012182.1-201ENST00000570133 895 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.19□□□□□ -1.74
FOXN3O00409 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXN3O00409 AF038458.1-201ENST00000588406 262 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 AC244505.7-201ENST00000599675 272 ntBASIC4.19□□□□□ -1.74
FOXN3O00409 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXN3O00409 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXN3O00409 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
FOXN3O00409 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXN3O00409 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.19□□□□□ -1.74
FOXN3O00409 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXN3O00409 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.18□□□□□ -1.74
FOXN3O00409 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXN3O00409 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXN3O00409 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXN3O00409 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 Y_RNA.296-201ENST00000364930 108 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 SNORA20.2-201ENST00000383922 131 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 Y_RNA.582-201ENST00000391023 95 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 RPL21P65-201ENST00000406094 466 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 RNA5SP107-201ENST00000411358 122 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXN3O00409 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXN3O00409 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
FOXN3O00409 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXN3O00409 MTCO1P39-201ENST00000426148 480 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 C4BPAP2-201ENST00000428434 478 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 FCF1P1-201ENST00000432690 571 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 AC091390.1-201ENST00000433904 331 ntBASIC4.18□□□□□ -1.74
FOXN3O00409 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXN3O00409 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms