Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 SCARNA24.1-201ENST00000516465 137 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 RNA5SP73-201ENST00000516744 108 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-1092P-201ENST00000516955 87 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC090572.1-201ENST00000519251 160 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 RPL23AP53-201ENST00000521854 457 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AP003033.1-201ENST00000527244 415 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC022968.1-201ENST00000567372 442 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC120057.2-201ENST00000571520 271 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AP002360.4-201ENST00000606980 481 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC007684.1-201ENST00000609671 477 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 MIR6500-201ENST00000622700 86 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 AC008568.2-201ENST00000623862 2313 ntBASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC9Q9Y3X0 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC073343.1-201ENST00000328239 651 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-1097P-201ENST00000363586 107 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RNA5SP175-201ENST00000364275 119 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-641P-201ENST00000384006 107 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 MIR558-201ENST00000384920 94 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 NDUFS5P1-201ENST00000405668 289 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RPS23P10-201ENST00000416185 486 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AL157831.1-201ENST00000426134 473 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 MED13P1-201ENST00000428342 171 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC020550.1-201ENST00000447385 163 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 SNORA59A-201ENST00000459326 152 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RPS23P3-201ENST00000470993 430 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RPL31P60-201ENST00000478450 367 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RPL9P33-201ENST00000484311 566 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC079382.1-201ENST00000493346 557 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 ARL2BPP6-201ENST00000512757 439 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 RNA5SP249-201ENST00000516127 99 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 SCARNA15.2-201ENST00000516409 127 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 ZDHHC20P3-201ENST00000531576 336 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC016957.1-201ENST00000534895 309 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 BPIFA4P-203ENST00000603168 689 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC026368.1-201ENST00000614934 690 ntBASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC5.76□□□□□ -1.49
CCDC9Q9Y3X0 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC027514.1-201ENST00000588561 1603 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-108P-201ENST00000365558 107 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 MIR493-201ENST00000385254 89 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 TRAPPC2P4-201ENST00000421750 331 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 OR5BE1P-201ENST00000425977 939 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC002486.1-201ENST00000435098 391 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC022364.2-201ENST00000457963 554 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 SRRM1P2-201ENST00000464531 1192 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC026427.2-201ENST00000506228 536 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 RNU6-506P-201ENST00000516553 94 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AP003072.2-201ENST00000527756 676 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC005951.1-201ENST00000576706 485 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC002545.1-201ENST00000592511 181 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 uc_338.32-201ENST00000615087 172 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AL391261.4-201ENST00000616012 481 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 AL589994.2-201ENST00000621124 579 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 MIR6863-201ENST00000636112 90 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 OR5BE1P-202ENST00000641168 1176 ntBASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
CCDC9Q9Y3X0 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 171.3 ms