Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TDP1Q9NUW8 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 Y_RNA.22-201ENST00000362492 102 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 SNORA72.1-201ENST00000363485 129 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 MIR23B-201ENST00000384832 97 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 RNA5SP107-201ENST00000411358 122 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 RPS7P15-201ENST00000415804 584 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 ZNF90P2-204ENST00000419323 1075 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 RPS20P5-201ENST00000434808 360 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC005094.1-201ENST00000440420 368 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AL671855.1-201ENST00000446875 1203 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC016696.1-201ENST00000446949 318 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 ABCF2P2-201ENST00000450549 296 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC012158.1-204ENST00000483430 465 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 HSPD1P15-201ENST00000505573 1122 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 RNU6-835P-201ENST00000516974 104 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 IFITM8P-201ENST00000522529 394 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC060780.3-201ENST00000589464 80 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC245389.1-201ENST00000605141 529 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 RNA5SP108-201ENST00000605921 117 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC244100.1-202ENST00000621554 382 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 AC140113.4-201ENST00000622087 222 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 MIR3662-201ENST00000637030 95 ntBASIC4.31□□□□□ -1.72
TDP1Q9NUW8 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TDP1Q9NUW8 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC116667.1-201ENST00000604855 2072 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 Y_RNA.367-201ENST00000365544 101 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 MIR558-201ENST00000384920 94 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 MT-TL1-201ENST00000386347 75 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 MIR708-201ENST00000390708 88 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 RNU6-876P-201ENST00000391295 104 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AL109755.1-201ENST00000401791 649 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 RN7SKP167-201ENST00000411047 285 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 MTND3P10-201ENST00000450967 341 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC005008.1-201ENST00000456151 612 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 RPL36AP13-201ENST00000457490 317 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 DEFB109F-201ENST00000491870 277 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 RPS15AP36-201ENST00000492022 382 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 SNORA40.12-201ENST00000516329 111 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 SNORA20.3-201ENST00000516880 132 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC023632.4-201ENST00000517783 191 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 HMGN1P28-201ENST00000521340 364 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 PHBP17-201ENST00000528576 541 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC128657.1-201ENST00000549459 145 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 ARL2BPP2-201ENST00000550907 489 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 MIR4293-201ENST00000584305 78 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AL049634.3-201ENST00000604968 457 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AL121992.2-201ENST00000606262 256 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AL138721.1-201ENST00000616756 179 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 MIR7151-201ENST00000617477 60 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 YWHAEP7-203ENST00000622054 312 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 AL133412.1-201ENST00000380194 2992 ntBASIC4.3□□□□□ -1.72
TDP1Q9NUW8 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
TDP1Q9NUW8 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms